Strain Fitness in Dechlorosoma suillum PS around Dsui_1982

Experiment: ALP with sodium fluoride 40 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1981 and Dsui_1982 are separated by 170 nucleotidesDsui_1982 and Dsui_1983 overlap by 1 nucleotides Dsui_1981: Dsui_1981 - 23S rRNA (uracil-5-)-methyltransferase RumA, at 2,089,872 to 2,091,167 _1981 Dsui_1982: Dsui_1982 - sulfate adenylyltransferase, large subunit, at 2,091,338 to 2,092,612 _1982 Dsui_1983: Dsui_1983 - sulfate adenylyltransferase, small subunit, at 2,092,612 to 2,093,547 _1983 Position (kb) 2091 2092 2093Strain fitness (log2 ratio) -1 0 1at 2090.446 kb on + strand, within Dsui_1981at 2090.472 kb on - strand, within Dsui_1981at 2090.543 kb on + strand, within Dsui_1981at 2090.543 kb on + strand, within Dsui_1981at 2090.551 kb on - strand, within Dsui_1981at 2090.564 kb on - strand, within Dsui_1981at 2090.564 kb on - strand, within Dsui_1981at 2090.587 kb on + strand, within Dsui_1981at 2090.587 kb on + strand, within Dsui_1981at 2090.587 kb on + strand, within Dsui_1981at 2090.595 kb on - strand, within Dsui_1981at 2090.595 kb on - strand, within Dsui_1981at 2090.595 kb on - strand, within Dsui_1981at 2090.596 kb on + strand, within Dsui_1981at 2090.597 kb on + strand, within Dsui_1981at 2090.706 kb on - strand, within Dsui_1981at 2090.739 kb on - strand, within Dsui_1981at 2090.758 kb on + strand, within Dsui_1981at 2090.822 kb on + strand, within Dsui_1981at 2090.900 kb on - strand, within Dsui_1981at 2090.989 kb on - strandat 2091.002 kb on - strand, within Dsui_1981at 2091.007 kb on - strand, within Dsui_1981at 2091.058 kb on + strandat 2091.061 kb on - strandat 2091.066 kb on - strandat 2091.119 kb on + strandat 2091.135 kb on - strandat 2091.142 kb on + strandat 2091.150 kb on - strandat 2091.228 kb on + strandat 2091.241 kb on + strandat 2091.339 kb on - strandat 2091.347 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with sodium fluoride 40 mM
remove
2,090,446 + Dsui_1981 0.44 -0.1
2,090,472 - Dsui_1981 0.46 +1.2
2,090,543 + Dsui_1981 0.52 +0.9
2,090,543 + Dsui_1981 0.52 +0.2
2,090,551 - Dsui_1981 0.52 -0.4
2,090,564 - Dsui_1981 0.53 -0.8
2,090,564 - Dsui_1981 0.53 +1.2
2,090,587 + Dsui_1981 0.55 +0.4
2,090,587 + Dsui_1981 0.55 +0.5
2,090,587 + Dsui_1981 0.55 +0.1
2,090,595 - Dsui_1981 0.56 +1.2
2,090,595 - Dsui_1981 0.56 +1.2
2,090,595 - Dsui_1981 0.56 +1.2
2,090,596 + Dsui_1981 0.56 +0.6
2,090,597 + Dsui_1981 0.56 -0.2
2,090,706 - Dsui_1981 0.64 +0.2
2,090,739 - Dsui_1981 0.67 +1.2
2,090,758 + Dsui_1981 0.68 +0.5
2,090,822 + Dsui_1981 0.73 +0.3
2,090,900 - Dsui_1981 0.79 +0.2
2,090,989 - +1.2
2,091,002 - Dsui_1981 0.87 +0.2
2,091,007 - Dsui_1981 0.88 +1.2
2,091,058 + +1.6
2,091,061 - +1.2
2,091,066 - +0.2
2,091,119 + +0.1
2,091,135 - +0.2
2,091,142 + -0.1
2,091,150 - +1.2
2,091,228 + +1.2
2,091,241 + +1.2
2,091,339 - +0.2
2,091,347 - +0.5

Or see this region's nucleotide sequence