Experiment: ALP with sodium fluoride 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1887 and Dsui_1888 overlap by 17 nucleotides Dsui_1888 and Dsui_1889 are separated by 1 nucleotides Dsui_1889 and Dsui_1890 overlap by 4 nucleotides
Dsui_1887: Dsui_1887 - PAS domain S-box, at 1,985,686 to 1,987,896
_1887
Dsui_1888: Dsui_1888 - putative domain HDIG-containing protein, at 1,987,880 to 1,988,743
_1888
Dsui_1889: Dsui_1889 - hypothetical protein, at 1,988,745 to 1,989,068
_1889
Dsui_1890: Dsui_1890 - diguanylate cyclase (GGDEF) domain-containing protein, at 1,989,065 to 1,991,605
_1890
Position (kb)
1987
1988
1989 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1986.915 kb on - strand, within Dsui_1887 at 1986.916 kb on - strand, within Dsui_1887 at 1987.076 kb on + strand at 1987.144 kb on - strand, within Dsui_1887 at 1987.395 kb on + strand, within Dsui_1887 at 1987.405 kb on + strand, within Dsui_1887 at 1987.428 kb on + strand at 1987.592 kb on - strand at 1987.656 kb on - strand, within Dsui_1887 at 1987.678 kb on + strand at 1987.689 kb on + strand at 1987.810 kb on + strand at 1987.838 kb on - strand at 1987.902 kb on - strand at 1987.935 kb on - strand at 1988.129 kb on - strand, within Dsui_1888 at 1988.160 kb on + strand at 1988.177 kb on + strand at 1988.184 kb on - strand, within Dsui_1888 at 1988.438 kb on + strand, within Dsui_1888 at 1988.440 kb on - strand, within Dsui_1888 at 1988.776 kb on + strand at 1988.794 kb on - strand, within Dsui_1889 at 1989.230 kb on + strand at 1989.245 kb on - strand at 1989.365 kb on + strand, within Dsui_1890 at 1989.395 kb on - strand, within Dsui_1890 at 1989.532 kb on + strand, within Dsui_1890 at 1989.661 kb on + strand, within Dsui_1890
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 40 mM remove 1,986,915 - Dsui_1887 0.56 -1.7 1,986,916 - Dsui_1887 0.56 +0.9 1,987,076 + +0.9 1,987,144 - Dsui_1887 0.66 +0.9 1,987,395 + Dsui_1887 0.77 +0.9 1,987,405 + Dsui_1887 0.78 -1.7 1,987,428 + +0.9 1,987,592 - +0.9 1,987,656 - Dsui_1887 0.89 -0.7 1,987,678 + -0.1 1,987,689 + -2.1 1,987,810 + +0.9 1,987,838 - -0.7 1,987,902 - +0.9 1,987,935 - +0.9 1,988,129 - Dsui_1888 0.29 -0.7 1,988,160 + +0.9 1,988,177 + +0.9 1,988,184 - Dsui_1888 0.35 -1.7 1,988,438 + Dsui_1888 0.65 -0.7 1,988,440 - Dsui_1888 0.65 -0.7 1,988,776 + +1.9 1,988,794 - Dsui_1889 0.15 -0.7 1,989,230 + +0.9 1,989,245 - -0.7 1,989,365 + Dsui_1890 0.12 +0.9 1,989,395 - Dsui_1890 0.13 -1.4 1,989,532 + Dsui_1890 0.18 -1.1 1,989,661 + Dsui_1890 0.23 -1.1
Or see this region's nucleotide sequence