Experiment: ALP with sodium fluoride 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1832 and Dsui_1833 are separated by 2 nucleotides Dsui_1833 and Dsui_1834 are separated by 187 nucleotides Dsui_1834 and Dsui_1835 are separated by 139 nucleotides
Dsui_1832: Dsui_1832 - nitrate ABC transporter, permease protein, at 1,931,251 to 1,932,141
_1832
Dsui_1833: Dsui_1833 - nitrate transport ATP-binding subunits C and D, at 1,932,144 to 1,932,944
_1833
Dsui_1834: Dsui_1834 - hypothetical protein, at 1,933,132 to 1,933,401
_1834
Dsui_1835: Dsui_1835 - glycosyltransferase, at 1,933,541 to 1,934,737
_1835
Position (kb)
1932
1933 Strain fitness (log2 ratio)
-2
-1
0
1 at 1931.144 kb on + strand at 1931.156 kb on + strand at 1931.390 kb on - strand at 1931.570 kb on + strand, within Dsui_1832 at 1931.765 kb on - strand at 1931.809 kb on - strand, within Dsui_1832 at 1931.845 kb on - strand at 1931.863 kb on + strand at 1931.889 kb on + strand, within Dsui_1832 at 1931.905 kb on + strand, within Dsui_1832 at 1932.003 kb on - strand, within Dsui_1832 at 1932.030 kb on + strand, within Dsui_1832 at 1932.079 kb on - strand at 1932.098 kb on + strand at 1932.136 kb on - strand at 1932.161 kb on + strand at 1932.169 kb on - strand at 1932.233 kb on - strand at 1932.283 kb on + strand, within Dsui_1833 at 1932.291 kb on - strand at 1932.317 kb on - strand, within Dsui_1833 at 1932.414 kb on + strand at 1932.433 kb on + strand, within Dsui_1833 at 1932.492 kb on - strand at 1932.518 kb on + strand, within Dsui_1833 at 1932.522 kb on + strand at 1932.611 kb on + strand, within Dsui_1833 at 1932.611 kb on + strand, within Dsui_1833 at 1932.619 kb on - strand at 1932.619 kb on - strand, within Dsui_1833 at 1932.631 kb on - strand, within Dsui_1833 at 1932.705 kb on + strand, within Dsui_1833 at 1932.933 kb on - strand at 1932.958 kb on - strand at 1932.986 kb on - strand at 1933.041 kb on + strand at 1933.049 kb on - strand at 1933.091 kb on - strand at 1933.109 kb on + strand at 1933.117 kb on - strand at 1933.127 kb on - strand at 1933.138 kb on - strand at 1933.186 kb on - strand, within Dsui_1834 at 1933.237 kb on + strand at 1933.339 kb on - strand, within Dsui_1834 at 1933.359 kb on + strand, within Dsui_1834 at 1933.382 kb on - strand at 1933.386 kb on + strand at 1933.396 kb on - strand at 1933.398 kb on + strand at 1933.576 kb on - strand at 1933.613 kb on + strand at 1933.637 kb on + strand at 1933.637 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 40 mM remove 1,931,144 + +0.8 1,931,156 + -1.2 1,931,390 - +0.8 1,931,570 + Dsui_1832 0.36 -1.5 1,931,765 - +0.8 1,931,809 - Dsui_1832 0.63 -0.2 1,931,845 - +0.8 1,931,863 + +0.8 1,931,889 + Dsui_1832 0.72 +0.8 1,931,905 + Dsui_1832 0.73 -0.8 1,932,003 - Dsui_1832 0.84 -0.2 1,932,030 + Dsui_1832 0.87 +0.0 1,932,079 - +0.8 1,932,098 + -0.2 1,932,136 - +0.8 1,932,161 + +0.8 1,932,169 - +0.8 1,932,233 - +0.8 1,932,283 + Dsui_1833 0.17 -0.2 1,932,291 - +0.8 1,932,317 - Dsui_1833 0.22 -0.8 1,932,414 + +0.8 1,932,433 + Dsui_1833 0.36 -0.2 1,932,492 - -0.2 1,932,518 + Dsui_1833 0.47 +0.8 1,932,522 + +0.8 1,932,611 + Dsui_1833 0.58 -1.8 1,932,611 + Dsui_1833 0.58 -0.8 1,932,619 - -0.2 1,932,619 - Dsui_1833 0.59 -0.8 1,932,631 - Dsui_1833 0.61 -2.0 1,932,705 + Dsui_1833 0.70 -0.8 1,932,933 - -0.8 1,932,958 - +0.8 1,932,986 - -0.8 1,933,041 + +0.8 1,933,049 - -2.0 1,933,091 - -0.2 1,933,109 + -0.2 1,933,117 - -0.8 1,933,127 - -0.2 1,933,138 - -0.8 1,933,186 - Dsui_1834 0.20 +0.8 1,933,237 + +0.8 1,933,339 - Dsui_1834 0.77 -0.2 1,933,359 + Dsui_1834 0.84 -0.8 1,933,382 - +0.8 1,933,386 + +0.8 1,933,396 - +0.6 1,933,398 + +0.8 1,933,576 - +0.8 1,933,613 + +0.8 1,933,637 + +0.8 1,933,637 + +0.8
Or see this region's nucleotide sequence