Strain Fitness in Dechlorosoma suillum PS around Dsui_1209

Experiment: ALP with sodium fluoride 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1207 and Dsui_1208 are separated by 134 nucleotidesDsui_1208 and Dsui_1209 are separated by 17 nucleotidesDsui_1209 and Dsui_1210 are separated by 80 nucleotides Dsui_1207: Dsui_1207 - putative calcium-binding protein, at 1,258,271 to 1,265,536 _1207 Dsui_1208: Dsui_1208 - tRNA-Met, at 1,265,671 to 1,265,747 _1208 Dsui_1209: Dsui_1209 - RNA polymerase sigma factor, sigma-70 family, at 1,265,765 to 1,267,735 _1209 Dsui_1210: Dsui_1210 - DNA primase, catalytic core, at 1,267,816 to 1,269,570 _1210 Position (kb) 1265 1266 1267 1268Strain fitness (log2 ratio) -2 -1 0 1at 1264.773 kb on - strand, within Dsui_1207at 1264.773 kb on - strand, within Dsui_1207at 1264.773 kb on - strand, within Dsui_1207at 1264.773 kb on - strand, within Dsui_1207at 1264.793 kb on + strand, within Dsui_1207at 1264.800 kb on + strandat 1264.837 kb on + strandat 1264.902 kb on + strandat 1264.902 kb on + strandat 1264.904 kb on + strandat 1264.954 kb on + strandat 1264.955 kb on + strandat 1264.977 kb on - strandat 1264.984 kb on + strandat 1264.994 kb on + strandat 1265.002 kb on - strandat 1265.005 kb on + strandat 1265.046 kb on - strandat 1265.046 kb on - strandat 1265.050 kb on + strandat 1265.090 kb on + strandat 1265.110 kb on + strandat 1265.117 kb on + strandat 1265.118 kb on - strandat 1265.118 kb on - strandat 1265.118 kb on - strandat 1265.141 kb on + strandat 1265.146 kb on + strandat 1265.184 kb on - strandat 1265.193 kb on + strandat 1265.203 kb on + strandat 1265.246 kb on + strandat 1265.248 kb on + strandat 1265.262 kb on - strandat 1265.273 kb on - strandat 1265.302 kb on + strandat 1265.302 kb on + strandat 1265.302 kb on + strandat 1265.302 kb on + strandat 1265.302 kb on + strandat 1265.302 kb on + strandat 1265.325 kb on - strandat 1265.398 kb on - strandat 1265.433 kb on + strandat 1265.437 kb on + strandat 1265.437 kb on + strandat 1265.437 kb on + strandat 1265.445 kb on - strandat 1265.445 kb on - strandat 1265.445 kb on - strandat 1265.445 kb on - strandat 1265.445 kb on - strandat 1265.445 kb on - strandat 1265.488 kb on - strandat 1265.499 kb on - strandat 1265.507 kb on - strandat 1265.529 kb on - strandat 1265.559 kb on + strandat 1265.559 kb on + strandat 1265.559 kb on + strandat 1265.562 kb on + strandat 1265.567 kb on - strandat 1265.620 kb on - strandat 1265.743 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with sodium fluoride 40 mM
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1,264,773 - Dsui_1207 0.89 -1.0
1,264,773 - Dsui_1207 0.89 -1.3
1,264,773 - Dsui_1207 0.89 +0.6
1,264,773 - Dsui_1207 0.89 +0.6
1,264,793 + Dsui_1207 0.90 -1.0
1,264,800 + +0.6
1,264,837 + +0.6
1,264,902 + +0.6
1,264,902 + -1.0
1,264,904 + +1.0
1,264,954 + -1.4
1,264,955 + +0.6
1,264,977 - +1.6
1,264,984 + -2.2
1,264,994 + -1.4
1,265,002 - -0.4
1,265,005 + -0.4
1,265,046 - -2.2
1,265,046 - -1.7
1,265,050 + -1.4
1,265,090 + +0.6
1,265,110 + +0.0
1,265,117 + +0.6
1,265,118 - +0.6
1,265,118 - -1.0
1,265,118 - +0.6
1,265,141 + +0.6
1,265,146 + +0.6
1,265,184 - +0.6
1,265,193 + -2.2
1,265,203 + +0.6
1,265,246 + -1.0
1,265,248 + -0.5
1,265,262 - -0.4
1,265,273 - +0.6
1,265,302 + -2.0
1,265,302 + -0.6
1,265,302 + -0.4
1,265,302 + -0.8
1,265,302 + -1.0
1,265,302 + +1.2
1,265,325 - -2.2
1,265,398 - -1.0
1,265,433 + +0.6
1,265,437 + +0.6
1,265,437 + -0.8
1,265,437 + -2.2
1,265,445 - -0.4
1,265,445 - +0.6
1,265,445 - -0.4
1,265,445 - -0.4
1,265,445 - -1.0
1,265,445 - -0.4
1,265,488 - +1.6
1,265,499 - -1.2
1,265,507 - -0.1
1,265,529 - +0.6
1,265,559 + -0.9
1,265,559 + -0.3
1,265,559 + -1.2
1,265,562 + -0.7
1,265,567 - -1.4
1,265,620 - -1.0
1,265,743 + -0.7

Or see this region's nucleotide sequence