Experiment: ALP with sodium fluoride 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1114 and Dsui_1115 are separated by 92 nucleotides Dsui_1115 and Dsui_1116 are separated by 131 nucleotides
Dsui_1114: Dsui_1114 - coenzyme F390 synthetase, at 1,161,201 to 1,162,433
_1114
Dsui_1115: Dsui_1115 - putative acyl-CoA transferase/carnitine dehydratase, at 1,162,526 to 1,163,692
_1115
Dsui_1116: Dsui_1116 - methyl-accepting chemotaxis protein, at 1,163,824 to 1,165,431
_1116
Position (kb)
1162
1163
1164 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1161.617 kb on - strand, within Dsui_1114 at 1161.687 kb on - strand, within Dsui_1114 at 1161.732 kb on + strand, within Dsui_1114 at 1161.802 kb on - strand, within Dsui_1114 at 1161.809 kb on - strand, within Dsui_1114 at 1161.809 kb on - strand, within Dsui_1114 at 1161.867 kb on - strand, within Dsui_1114 at 1161.886 kb on + strand, within Dsui_1114 at 1161.931 kb on + strand, within Dsui_1114 at 1161.938 kb on - strand, within Dsui_1114 at 1162.024 kb on - strand, within Dsui_1114 at 1162.129 kb on - strand, within Dsui_1114 at 1162.133 kb on + strand, within Dsui_1114 at 1162.247 kb on - strand, within Dsui_1114 at 1162.280 kb on - strand, within Dsui_1114 at 1162.280 kb on - strand, within Dsui_1114 at 1162.288 kb on - strand, within Dsui_1114 at 1162.352 kb on - strand at 1162.415 kb on + strand at 1162.482 kb on - strand at 1162.540 kb on + strand at 1162.565 kb on - strand at 1162.565 kb on - strand at 1162.596 kb on + strand at 1162.680 kb on + strand, within Dsui_1115 at 1162.690 kb on + strand, within Dsui_1115 at 1163.152 kb on - strand, within Dsui_1115 at 1163.365 kb on + strand, within Dsui_1115 at 1163.365 kb on + strand, within Dsui_1115 at 1163.392 kb on + strand, within Dsui_1115 at 1163.424 kb on - strand, within Dsui_1115 at 1163.427 kb on - strand, within Dsui_1115 at 1163.473 kb on - strand, within Dsui_1115 at 1163.476 kb on + strand, within Dsui_1115 at 1163.491 kb on - strand, within Dsui_1115 at 1163.540 kb on + strand, within Dsui_1115 at 1163.540 kb on + strand, within Dsui_1115 at 1163.551 kb on - strand, within Dsui_1115 at 1163.618 kb on + strand at 1163.676 kb on + strand at 1163.694 kb on - strand at 1163.711 kb on + strand at 1163.758 kb on - strand at 1163.782 kb on + strand at 1163.782 kb on + strand at 1163.840 kb on - strand at 1163.877 kb on + strand at 1163.928 kb on + strand at 1163.973 kb on + strand at 1164.016 kb on - strand, within Dsui_1116 at 1164.028 kb on - strand, within Dsui_1116 at 1164.032 kb on + strand, within Dsui_1116 at 1164.048 kb on - strand, within Dsui_1116 at 1164.093 kb on - strand, within Dsui_1116 at 1164.098 kb on - strand, within Dsui_1116 at 1164.098 kb on - strand, within Dsui_1116 at 1164.098 kb on - strand, within Dsui_1116 at 1164.171 kb on - strand, within Dsui_1116 at 1164.179 kb on + strand, within Dsui_1116 at 1164.442 kb on + strand, within Dsui_1116 at 1164.477 kb on + strand, within Dsui_1116 at 1164.546 kb on + strand, within Dsui_1116 at 1164.624 kb on + strand, within Dsui_1116 at 1164.632 kb on - strand, within Dsui_1116 at 1164.658 kb on + strand, within Dsui_1116
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 40 mM remove 1,161,617 - Dsui_1114 0.34 -0.3 1,161,687 - Dsui_1114 0.39 +0.7 1,161,732 + Dsui_1114 0.43 +0.7 1,161,802 - Dsui_1114 0.49 +0.7 1,161,809 - Dsui_1114 0.49 +0.7 1,161,809 - Dsui_1114 0.49 -1.3 1,161,867 - Dsui_1114 0.54 -2.1 1,161,886 + Dsui_1114 0.56 +0.7 1,161,931 + Dsui_1114 0.59 +0.7 1,161,938 - Dsui_1114 0.60 +0.7 1,162,024 - Dsui_1114 0.67 +0.7 1,162,129 - Dsui_1114 0.75 +0.7 1,162,133 + Dsui_1114 0.76 -0.9 1,162,247 - Dsui_1114 0.85 -0.3 1,162,280 - Dsui_1114 0.88 +0.7 1,162,280 - Dsui_1114 0.88 +0.7 1,162,288 - Dsui_1114 0.88 +0.7 1,162,352 - +0.7 1,162,415 + -1.3 1,162,482 - -1.3 1,162,540 + +0.7 1,162,565 - -0.3 1,162,565 - -0.3 1,162,596 + +0.7 1,162,680 + Dsui_1115 0.13 +0.7 1,162,690 + Dsui_1115 0.14 -0.9 1,163,152 - Dsui_1115 0.54 -1.3 1,163,365 + Dsui_1115 0.72 -1.3 1,163,365 + Dsui_1115 0.72 +0.7 1,163,392 + Dsui_1115 0.74 +0.7 1,163,424 - Dsui_1115 0.77 -0.3 1,163,427 - Dsui_1115 0.77 -0.1 1,163,473 - Dsui_1115 0.81 -0.3 1,163,476 + Dsui_1115 0.81 -4.0 1,163,491 - Dsui_1115 0.83 -1.3 1,163,540 + Dsui_1115 0.87 +0.7 1,163,540 + Dsui_1115 0.87 -0.3 1,163,551 - Dsui_1115 0.88 +0.7 1,163,618 + -1.6 1,163,676 + -0.3 1,163,694 - -1.3 1,163,711 + -0.3 1,163,758 - -0.9 1,163,782 + -0.3 1,163,782 + +0.0 1,163,840 - +0.7 1,163,877 + -0.4 1,163,928 + -0.1 1,163,973 + +0.3 1,164,016 - Dsui_1116 0.12 +0.7 1,164,028 - Dsui_1116 0.13 +0.7 1,164,032 + Dsui_1116 0.13 -0.4 1,164,048 - Dsui_1116 0.14 +0.7 1,164,093 - Dsui_1116 0.17 -0.3 1,164,098 - Dsui_1116 0.17 +0.7 1,164,098 - Dsui_1116 0.17 -0.3 1,164,098 - Dsui_1116 0.17 -0.3 1,164,171 - Dsui_1116 0.22 -0.9 1,164,179 + Dsui_1116 0.22 +0.2 1,164,442 + Dsui_1116 0.38 -0.0 1,164,477 + Dsui_1116 0.41 -0.2 1,164,546 + Dsui_1116 0.45 -0.3 1,164,624 + Dsui_1116 0.50 -0.1 1,164,632 - Dsui_1116 0.50 -0.3 1,164,658 + Dsui_1116 0.52 +0.2
Or see this region's nucleotide sequence