Strain Fitness in Dechlorosoma suillum PS around Dsui_0842

Experiment: ALP with sodium fluoride 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0840 and Dsui_0841 are separated by 148 nucleotidesDsui_0841 and Dsui_0842 overlap by 1 nucleotidesDsui_0842 and Dsui_0843 overlap by 4 nucleotides Dsui_0840: Dsui_0840 - ABC-type branched-chain amino acid transport system, periplasmic component, at 855,039 to 856,208 _0840 Dsui_0841: Dsui_0841 - ABC-type branched-chain amino acid transport systems, ATPase component, at 856,357 to 857,112 _0841 Dsui_0842: Dsui_0842 - ABC-type branched-chain amino acid transport systems, ATPase component, at 857,112 to 858,893 _0842 Dsui_0843: Dsui_0843 - branched-chain amino acid ABC-type transport system, permease component, at 858,890 to 859,939 _0843 Position (kb) 857 858 859Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 856.113 kb on + strandat 856.113 kb on - strandat 856.113 kb on - strandat 856.120 kb on + strandat 856.129 kb on - strandat 856.169 kb on + strandat 856.172 kb on - strandat 856.394 kb on - strandat 856.419 kb on + strandat 856.601 kb on - strand, within Dsui_0841at 856.723 kb on + strandat 856.734 kb on + strand, within Dsui_0841at 856.750 kb on - strand, within Dsui_0841at 856.776 kb on + strand, within Dsui_0841at 856.819 kb on + strand, within Dsui_0841at 856.857 kb on - strand, within Dsui_0841at 856.859 kb on + strand, within Dsui_0841at 856.863 kb on - strand, within Dsui_0841at 856.882 kb on + strand, within Dsui_0841at 856.952 kb on - strand, within Dsui_0841at 856.962 kb on - strand, within Dsui_0841at 857.022 kb on + strand, within Dsui_0841at 857.030 kb on - strand, within Dsui_0841at 857.030 kb on - strand, within Dsui_0841at 857.095 kb on - strandat 857.118 kb on - strandat 857.130 kb on - strandat 857.130 kb on - strandat 857.164 kb on + strandat 857.207 kb on + strandat 857.577 kb on + strand, within Dsui_0842at 857.583 kb on - strand, within Dsui_0842at 857.733 kb on - strand, within Dsui_0842at 857.735 kb on - strand, within Dsui_0842at 857.758 kb on + strand, within Dsui_0842at 857.993 kb on - strand, within Dsui_0842at 858.084 kb on - strand, within Dsui_0842at 858.128 kb on - strand, within Dsui_0842at 858.133 kb on + strandat 858.164 kb on - strand, within Dsui_0842at 858.300 kb on - strand, within Dsui_0842at 858.300 kb on - strand, within Dsui_0842at 858.336 kb on + strand, within Dsui_0842at 858.415 kb on - strand, within Dsui_0842at 858.415 kb on - strand, within Dsui_0842at 858.453 kb on - strand, within Dsui_0842at 858.455 kb on - strand, within Dsui_0842at 858.521 kb on - strand, within Dsui_0842at 858.523 kb on - strand, within Dsui_0842at 858.528 kb on + strand, within Dsui_0842at 858.541 kb on - strand, within Dsui_0842at 858.549 kb on - strand, within Dsui_0842at 858.586 kb on + strand, within Dsui_0842at 858.622 kb on - strand, within Dsui_0842at 858.638 kb on + strand, within Dsui_0842at 858.794 kb on - strandat 858.808 kb on - strandat 858.913 kb on + strandat 858.921 kb on - strandat 858.927 kb on - strandat 859.215 kb on + strand, within Dsui_0843at 859.260 kb on + strand, within Dsui_0843at 859.265 kb on + strand, within Dsui_0843at 859.265 kb on + strand, within Dsui_0843at 859.265 kb on + strand, within Dsui_0843at 859.265 kb on + strand, within Dsui_0843at 859.265 kb on + strand, within Dsui_0843at 859.265 kb on + strand, within Dsui_0843at 859.266 kb on - strand, within Dsui_0843at 859.268 kb on - strand, within Dsui_0843at 859.273 kb on - strand, within Dsui_0843at 859.273 kb on - strand, within Dsui_0843at 859.273 kb on - strand, within Dsui_0843at 859.346 kb on - strand, within Dsui_0843at 859.397 kb on + strand, within Dsui_0843at 859.426 kb on + strand, within Dsui_0843at 859.515 kb on + strand, within Dsui_0843at 859.586 kb on + strand, within Dsui_0843at 859.637 kb on - strand, within Dsui_0843at 859.696 kb on - strand, within Dsui_0843at 859.696 kb on - strand, within Dsui_0843at 859.714 kb on + strand, within Dsui_0843at 859.722 kb on - strand, within Dsui_0843at 859.744 kb on + strand, within Dsui_0843at 859.752 kb on - strand, within Dsui_0843at 859.786 kb on + strand, within Dsui_0843at 859.786 kb on + strand, within Dsui_0843at 859.794 kb on - strand, within Dsui_0843at 859.795 kb on - strand, within Dsui_0843at 859.861 kb on + strandat 859.861 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with sodium fluoride 40 mM
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856,113 + +0.1
856,113 - +0.7
856,113 - +0.1
856,120 + -0.9
856,129 - -2.5
856,169 + -0.3
856,172 - -1.7
856,394 - +0.0
856,419 + -1.3
856,601 - Dsui_0841 0.32 -0.1
856,723 + +0.7
856,734 + Dsui_0841 0.50 +2.7
856,750 - Dsui_0841 0.52 -0.1
856,776 + Dsui_0841 0.55 -0.3
856,819 + Dsui_0841 0.61 -0.3
856,857 - Dsui_0841 0.66 -0.2
856,859 + Dsui_0841 0.66 +0.7
856,863 - Dsui_0841 0.67 +0.1
856,882 + Dsui_0841 0.69 -0.3
856,952 - Dsui_0841 0.79 -0.2
856,962 - Dsui_0841 0.80 +0.2
857,022 + Dsui_0841 0.88 -0.3
857,030 - Dsui_0841 0.89 -0.1
857,030 - Dsui_0841 0.89 -0.2
857,095 - -2.1
857,118 - -0.4
857,130 - +0.1
857,130 - -0.1
857,164 + -0.6
857,207 + -2.5
857,577 + Dsui_0842 0.26 -1.3
857,583 - Dsui_0842 0.26 -0.0
857,733 - Dsui_0842 0.35 +0.2
857,735 - Dsui_0842 0.35 -0.6
857,758 + Dsui_0842 0.36 -1.9
857,993 - Dsui_0842 0.49 -0.0
858,084 - Dsui_0842 0.55 -0.2
858,128 - Dsui_0842 0.57 -0.2
858,133 + +0.7
858,164 - Dsui_0842 0.59 -0.2
858,300 - Dsui_0842 0.67 +0.2
858,300 - Dsui_0842 0.67 -0.2
858,336 + Dsui_0842 0.69 +0.7
858,415 - Dsui_0842 0.73 +0.0
858,415 - Dsui_0842 0.73 +0.3
858,453 - Dsui_0842 0.75 -0.4
858,455 - Dsui_0842 0.75 -0.8
858,521 - Dsui_0842 0.79 -0.2
858,523 - Dsui_0842 0.79 +0.1
858,528 + Dsui_0842 0.79 +0.7
858,541 - Dsui_0842 0.80 -0.2
858,549 - Dsui_0842 0.81 -0.1
858,586 + Dsui_0842 0.83 -3.1
858,622 - Dsui_0842 0.85 +0.0
858,638 + Dsui_0842 0.86 +0.7
858,794 - -0.0
858,808 - -0.3
858,913 + -0.3
858,921 - -0.4
858,927 - -0.2
859,215 + Dsui_0843 0.31 -1.6
859,260 + Dsui_0843 0.35 -0.9
859,265 + Dsui_0843 0.36 +1.7
859,265 + Dsui_0843 0.36 +2.7
859,265 + Dsui_0843 0.36 -1.6
859,265 + Dsui_0843 0.36 -0.3
859,265 + Dsui_0843 0.36 -1.2
859,265 + Dsui_0843 0.36 -0.9
859,266 - Dsui_0843 0.36 +0.0
859,268 - Dsui_0843 0.36 -0.2
859,273 - Dsui_0843 0.36 +0.2
859,273 - Dsui_0843 0.36 -0.4
859,273 - Dsui_0843 0.36 -0.2
859,346 - Dsui_0843 0.43 +0.1
859,397 + Dsui_0843 0.48 -0.9
859,426 + Dsui_0843 0.51 +0.7
859,515 + Dsui_0843 0.60 -1.3
859,586 + Dsui_0843 0.66 -1.1
859,637 - Dsui_0843 0.71 -0.2
859,696 - Dsui_0843 0.77 -0.3
859,696 - Dsui_0843 0.77 -0.5
859,714 + Dsui_0843 0.78 +0.7
859,722 - Dsui_0843 0.79 +0.1
859,744 + Dsui_0843 0.81 +1.4
859,752 - Dsui_0843 0.82 +0.1
859,786 + Dsui_0843 0.85 -0.9
859,786 + Dsui_0843 0.85 -2.5
859,794 - Dsui_0843 0.86 -0.2
859,795 - Dsui_0843 0.86 -0.1
859,861 + -0.9
859,861 + -0.9

Or see this region's nucleotide sequence