Experiment: ALP with sodium fluoride 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0787 and Dsui_0788 overlap by 40 nucleotides Dsui_0788 and Dsui_0789 are separated by 256 nucleotides Dsui_0789 and Dsui_0790 are separated by 104 nucleotides
Dsui_0787: Dsui_0787 - putative membrane protein, at 794,134 to 794,580
_0787
Dsui_0788: Dsui_0788 - phosphosulfolactate phosphohydrolase-like enzyme, at 794,541 to 795,278
_0788
Dsui_0789: Dsui_0789 - diguanylate cyclase (GGDEF) domain-containing protein, at 795,535 to 796,566
_0789
Dsui_0790: Dsui_0790 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 796,671 to 797,705
_0790
Position (kb)
795
796
797 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 794.575 kb on + strand at 794.657 kb on + strand, within Dsui_0788 at 794.791 kb on + strand at 794.846 kb on + strand, within Dsui_0788 at 794.864 kb on - strand, within Dsui_0788 at 794.864 kb on - strand, within Dsui_0788 at 794.909 kb on - strand, within Dsui_0788 at 794.919 kb on + strand, within Dsui_0788 at 795.040 kb on - strand, within Dsui_0788 at 795.112 kb on - strand, within Dsui_0788 at 795.232 kb on + strand at 795.232 kb on + strand at 795.541 kb on - strand at 795.591 kb on - strand at 795.660 kb on + strand, within Dsui_0789 at 795.668 kb on - strand, within Dsui_0789 at 795.697 kb on + strand, within Dsui_0789 at 795.705 kb on - strand, within Dsui_0789 at 795.711 kb on - strand, within Dsui_0789 at 795.758 kb on - strand, within Dsui_0789 at 795.764 kb on + strand, within Dsui_0789 at 795.857 kb on - strand, within Dsui_0789 at 795.883 kb on - strand, within Dsui_0789 at 795.887 kb on + strand, within Dsui_0789 at 795.923 kb on - strand, within Dsui_0789 at 796.006 kb on - strand, within Dsui_0789 at 796.017 kb on + strand, within Dsui_0789 at 796.133 kb on - strand, within Dsui_0789 at 796.136 kb on + strand, within Dsui_0789 at 796.139 kb on - strand, within Dsui_0789 at 796.205 kb on + strand, within Dsui_0789 at 796.213 kb on - strand, within Dsui_0789 at 796.254 kb on + strand, within Dsui_0789 at 796.254 kb on + strand, within Dsui_0789 at 796.254 kb on + strand, within Dsui_0789 at 796.254 kb on + strand, within Dsui_0789 at 796.308 kb on + strand, within Dsui_0789 at 796.308 kb on + strand, within Dsui_0789 at 796.406 kb on + strand, within Dsui_0789 at 796.412 kb on + strand at 796.472 kb on - strand at 796.479 kb on + strand at 796.493 kb on + strand at 796.520 kb on - strand at 796.536 kb on - strand at 796.547 kb on - strand at 796.573 kb on + strand at 796.590 kb on - strand at 796.637 kb on + strand at 796.656 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 40 mM remove 794,575 + -1.1 794,657 + Dsui_0788 0.16 +0.3 794,791 + +2.2 794,846 + Dsui_0788 0.41 -0.7 794,864 - Dsui_0788 0.44 -0.5 794,864 - Dsui_0788 0.44 +0.1 794,909 - Dsui_0788 0.50 -0.4 794,919 + Dsui_0788 0.51 -1.0 795,040 - Dsui_0788 0.68 +0.0 795,112 - Dsui_0788 0.77 +0.1 795,232 + -1.7 795,232 + -2.8 795,541 - +0.6 795,591 - +0.8 795,660 + Dsui_0789 0.12 -2.0 795,668 - Dsui_0789 0.13 -1.4 795,697 + Dsui_0789 0.16 -1.4 795,705 - Dsui_0789 0.16 +0.4 795,711 - Dsui_0789 0.17 -0.8 795,758 - Dsui_0789 0.22 -0.7 795,764 + Dsui_0789 0.22 -1.7 795,857 - Dsui_0789 0.31 +0.2 795,883 - Dsui_0789 0.34 -0.2 795,887 + Dsui_0789 0.34 -1.0 795,923 - Dsui_0789 0.38 -0.8 796,006 - Dsui_0789 0.46 -1.0 796,017 + Dsui_0789 0.47 -0.4 796,133 - Dsui_0789 0.58 +0.4 796,136 + Dsui_0789 0.58 -1.0 796,139 - Dsui_0789 0.59 +0.3 796,205 + Dsui_0789 0.65 -2.6 796,213 - Dsui_0789 0.66 -1.1 796,254 + Dsui_0789 0.70 -0.4 796,254 + Dsui_0789 0.70 -1.0 796,254 + Dsui_0789 0.70 -0.4 796,254 + Dsui_0789 0.70 +0.6 796,308 + Dsui_0789 0.75 -1.4 796,308 + Dsui_0789 0.75 -0.4 796,406 + Dsui_0789 0.84 -0.4 796,412 + +0.6 796,472 - -1.3 796,479 + +0.6 796,493 + +0.6 796,520 - -0.7 796,536 - -0.6 796,547 - -1.0 796,573 + -1.4 796,590 - -0.9 796,637 + -1.4 796,656 + -0.6
Or see this region's nucleotide sequence