Strain Fitness in Dechlorosoma suillum PS around Dsui_0756

Experiment: ALP with sodium fluoride 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0754 and Dsui_0755 are separated by 133 nucleotidesDsui_0755 and Dsui_0756 are separated by 142 nucleotidesDsui_0756 and Dsui_0757 are separated by 43 nucleotides Dsui_0754: Dsui_0754 - hypothetical protein, at 753,981 to 754,355 _0754 Dsui_0755: Dsui_0755 - hypothetical protein, at 754,489 to 755,103 _0755 Dsui_0756: Dsui_0756 - hypothetical protein, at 755,246 to 755,941 _0756 Dsui_0757: Dsui_0757 - HD-GYP domain-containing protein, at 755,985 to 757,190 _0757 Position (kb) 755 756Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 754.272 kb on + strand, within Dsui_0754at 754.346 kb on + strandat 754.365 kb on - strandat 754.421 kb on + strandat 754.438 kb on - strandat 754.458 kb on - strandat 754.492 kb on + strandat 754.493 kb on - strandat 754.500 kb on - strandat 754.500 kb on - strandat 754.549 kb on + strandat 754.549 kb on + strandat 754.583 kb on + strand, within Dsui_0755at 754.583 kb on + strand, within Dsui_0755at 754.589 kb on - strand, within Dsui_0755at 754.589 kb on - strand, within Dsui_0755at 754.591 kb on - strand, within Dsui_0755at 754.591 kb on - strand, within Dsui_0755at 754.602 kb on - strand, within Dsui_0755at 754.638 kb on + strand, within Dsui_0755at 754.648 kb on + strand, within Dsui_0755at 754.655 kb on + strand, within Dsui_0755at 754.655 kb on + strand, within Dsui_0755at 754.663 kb on - strand, within Dsui_0755at 754.781 kb on + strand, within Dsui_0755at 754.789 kb on - strand, within Dsui_0755at 754.832 kb on + strand, within Dsui_0755at 754.832 kb on + strand, within Dsui_0755at 754.840 kb on - strand, within Dsui_0755at 754.840 kb on - strand, within Dsui_0755at 754.857 kb on + strand, within Dsui_0755at 754.936 kb on - strand, within Dsui_0755at 754.938 kb on + strand, within Dsui_0755at 755.007 kb on - strand, within Dsui_0755at 755.080 kb on + strandat 755.098 kb on + strandat 755.098 kb on + strandat 755.103 kb on + strandat 755.103 kb on + strandat 755.103 kb on + strandat 755.103 kb on + strandat 755.188 kb on + strandat 755.204 kb on + strandat 755.261 kb on - strandat 755.276 kb on + strandat 755.328 kb on + strandat 755.435 kb on - strand, within Dsui_0756at 755.450 kb on - strand, within Dsui_0756at 755.532 kb on + strand, within Dsui_0756at 755.532 kb on + strand, within Dsui_0756at 755.540 kb on - strand, within Dsui_0756at 755.540 kb on - strand, within Dsui_0756at 755.672 kb on - strand, within Dsui_0756at 755.712 kb on + strand, within Dsui_0756at 755.769 kb on - strand, within Dsui_0756at 755.796 kb on + strand, within Dsui_0756at 755.817 kb on + strandat 755.826 kb on + strand, within Dsui_0756at 755.973 kb on + strandat 755.981 kb on - strandat 756.016 kb on + strandat 756.059 kb on - strandat 756.119 kb on - strand, within Dsui_0757at 756.183 kb on + strand, within Dsui_0757at 756.251 kb on + strand, within Dsui_0757at 756.292 kb on + strandat 756.311 kb on - strand, within Dsui_0757at 756.318 kb on - strand, within Dsui_0757at 756.359 kb on - strand, within Dsui_0757at 756.384 kb on + strand, within Dsui_0757at 756.394 kb on + strand, within Dsui_0757at 756.438 kb on - strand, within Dsui_0757at 756.452 kb on + strandat 756.462 kb on + strandat 756.481 kb on - strand, within Dsui_0757at 756.509 kb on - strand, within Dsui_0757at 756.574 kb on - strand, within Dsui_0757at 756.589 kb on - strand, within Dsui_0757at 756.607 kb on + strand, within Dsui_0757at 756.626 kb on + strand, within Dsui_0757at 756.634 kb on - strand, within Dsui_0757at 756.647 kb on + strand, within Dsui_0757at 756.647 kb on + strand, within Dsui_0757at 756.647 kb on + strand, within Dsui_0757at 756.655 kb on - strand, within Dsui_0757at 756.706 kb on + strand, within Dsui_0757at 756.706 kb on + strand, within Dsui_0757at 756.711 kb on + strand, within Dsui_0757at 756.801 kb on - strandat 756.908 kb on + strand, within Dsui_0757

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with sodium fluoride 40 mM
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754,272 + Dsui_0754 0.78 -1.0
754,346 + +0.6
754,365 - -0.4
754,421 + -1.0
754,438 - -0.4
754,458 - -1.4
754,492 + -1.0
754,493 - -0.6
754,500 - -2.0
754,500 - -0.4
754,549 + +0.6
754,549 + -1.4
754,583 + Dsui_0755 0.15 +0.6
754,583 + Dsui_0755 0.15 +0.6
754,589 - Dsui_0755 0.16 -1.7
754,589 - Dsui_0755 0.16 -1.0
754,591 - Dsui_0755 0.17 -1.2
754,591 - Dsui_0755 0.17 -0.4
754,602 - Dsui_0755 0.18 -3.0
754,638 + Dsui_0755 0.24 -1.0
754,648 + Dsui_0755 0.26 +0.6
754,655 + Dsui_0755 0.27 -1.7
754,655 + Dsui_0755 0.27 -0.7
754,663 - Dsui_0755 0.28 -0.4
754,781 + Dsui_0755 0.47 -1.4
754,789 - Dsui_0755 0.49 +0.2
754,832 + Dsui_0755 0.56 +0.6
754,832 + Dsui_0755 0.56 -2.4
754,840 - Dsui_0755 0.57 -0.7
754,840 - Dsui_0755 0.57 +0.9
754,857 + Dsui_0755 0.60 -2.0
754,936 - Dsui_0755 0.73 +1.8
754,938 + Dsui_0755 0.73 -1.4
755,007 - Dsui_0755 0.84 -0.1
755,080 + -0.4
755,098 + +0.6
755,098 + +0.6
755,103 + -1.0
755,103 + -0.4
755,103 + -0.4
755,103 + -0.4
755,188 + -0.4
755,204 + +0.6
755,261 - -0.0
755,276 + -1.7
755,328 + -0.4
755,435 - Dsui_0756 0.27 -1.3
755,450 - Dsui_0756 0.29 -2.2
755,532 + Dsui_0756 0.41 -1.4
755,532 + Dsui_0756 0.41 -0.4
755,540 - Dsui_0756 0.42 -1.9
755,540 - Dsui_0756 0.42 -2.4
755,672 - Dsui_0756 0.61 -1.8
755,712 + Dsui_0756 0.67 -1.0
755,769 - Dsui_0756 0.75 -3.6
755,796 + Dsui_0756 0.79 +0.6
755,817 + +0.6
755,826 + Dsui_0756 0.83 +0.6
755,973 + +0.6
755,981 - -0.1
756,016 + -1.0
756,059 - +0.1
756,119 - Dsui_0757 0.11 -0.6
756,183 + Dsui_0757 0.16 -0.4
756,251 + Dsui_0757 0.22 +0.6
756,292 + +0.6
756,311 - Dsui_0757 0.27 -0.2
756,318 - Dsui_0757 0.28 +0.2
756,359 - Dsui_0757 0.31 +0.4
756,384 + Dsui_0757 0.33 +0.6
756,394 + Dsui_0757 0.34 +0.6
756,438 - Dsui_0757 0.38 +2.2
756,452 + +0.6
756,462 + +0.6
756,481 - Dsui_0757 0.41 -1.1
756,509 - Dsui_0757 0.43 -0.4
756,574 - Dsui_0757 0.49 +0.1
756,589 - Dsui_0757 0.50 +0.2
756,607 + Dsui_0757 0.52 -1.7
756,626 + Dsui_0757 0.53 +0.6
756,634 - Dsui_0757 0.54 -0.9
756,647 + Dsui_0757 0.55 -2.4
756,647 + Dsui_0757 0.55 -1.0
756,647 + Dsui_0757 0.55 +0.6
756,655 - Dsui_0757 0.56 -1.0
756,706 + Dsui_0757 0.60 +0.6
756,706 + Dsui_0757 0.60 -0.4
756,711 + Dsui_0757 0.60 +0.6
756,801 - +0.6
756,908 + Dsui_0757 0.77 -1.4

Or see this region's nucleotide sequence