Experiment: ALP with sodium fluoride 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0262 and Dsui_0263 overlap by 4 nucleotides Dsui_0263 and Dsui_0264 are separated by 118 nucleotides Dsui_0264 and Dsui_0265 are separated by 74 nucleotides
Dsui_0262: Dsui_0262 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 259,881 to 262,799
_0262
Dsui_0263: Dsui_0263 - cytochrome c peroxidase, at 262,796 to 263,830
_0263
Dsui_0264: Dsui_0264 - tRNA-Phe, at 263,949 to 264,024
_0264
Dsui_0265: Dsui_0265 - signal transduction histidine kinase, at 264,099 to 265,634
_0265
Position (kb) 262
263
264 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 261.885 kb on + strand, within Dsui_0262 at 261.891 kb on + strand, within Dsui_0262 at 261.919 kb on - strand, within Dsui_0262 at 261.943 kb on - strand, within Dsui_0262 at 261.945 kb on - strand, within Dsui_0262 at 261.988 kb on - strand, within Dsui_0262 at 262.105 kb on - strand, within Dsui_0262 at 262.110 kb on + strand, within Dsui_0262 at 262.142 kb on + strand, within Dsui_0262 at 262.234 kb on + strand, within Dsui_0262 at 262.242 kb on - strand, within Dsui_0262 at 262.384 kb on + strand, within Dsui_0262 at 262.438 kb on + strand, within Dsui_0262 at 262.466 kb on - strand, within Dsui_0262 at 262.501 kb on - strand, within Dsui_0262 at 262.543 kb on + strand at 262.625 kb on + strand at 262.671 kb on + strand at 262.672 kb on + strand at 262.678 kb on + strand at 262.686 kb on - strand at 262.696 kb on - strand at 262.754 kb on - strand at 262.794 kb on + strand at 262.825 kb on + strand at 262.975 kb on - strand, within Dsui_0263 at 262.975 kb on - strand, within Dsui_0263 at 263.090 kb on - strand, within Dsui_0263 at 263.250 kb on + strand, within Dsui_0263 at 263.256 kb on + strand at 263.339 kb on - strand, within Dsui_0263 at 263.388 kb on + strand, within Dsui_0263 at 263.396 kb on - strand, within Dsui_0263 at 263.451 kb on + strand, within Dsui_0263 at 263.523 kb on + strand at 263.566 kb on - strand, within Dsui_0263 at 263.665 kb on + strand, within Dsui_0263 at 263.702 kb on + strand at 263.784 kb on - strand at 263.786 kb on - strand at 263.827 kb on + strand at 263.835 kb on - strand at 263.927 kb on - strand at 264.072 kb on - strand at 264.072 kb on - strand at 264.104 kb on - strand at 264.119 kb on + strand at 264.154 kb on + strand at 264.164 kb on + strand at 264.164 kb on + strand at 264.176 kb on + strand at 264.243 kb on + strand at 264.243 kb on + strand at 264.252 kb on - strand at 264.355 kb on - strand, within Dsui_0265 at 264.364 kb on - strand, within Dsui_0265 at 264.445 kb on - strand, within Dsui_0265 at 264.466 kb on + strand, within Dsui_0265 at 264.520 kb on - strand, within Dsui_0265 at 264.554 kb on + strand, within Dsui_0265 at 264.679 kb on + strand, within Dsui_0265 at 264.718 kb on + strand, within Dsui_0265 at 264.764 kb on + strand, within Dsui_0265 at 264.813 kb on + strand, within Dsui_0265
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 40 mM remove 261,885 + Dsui_0262 0.69 -0.9 261,891 + Dsui_0262 0.69 -0.3 261,919 - Dsui_0262 0.70 -1.2 261,943 - Dsui_0262 0.71 -0.3 261,945 - Dsui_0262 0.71 -0.2 261,988 - Dsui_0262 0.72 -0.3 262,105 - Dsui_0262 0.76 -0.1 262,110 + Dsui_0262 0.76 -0.9 262,142 + Dsui_0262 0.77 -0.3 262,234 + Dsui_0262 0.81 -0.9 262,242 - Dsui_0262 0.81 -1.0 262,384 + Dsui_0262 0.86 -0.9 262,438 + Dsui_0262 0.88 -1.6 262,466 - Dsui_0262 0.89 -0.3 262,501 - Dsui_0262 0.90 -0.4 262,543 + +0.7 262,625 + -0.9 262,671 + -1.6 262,672 + +0.7 262,678 + +0.7 262,686 - -0.1 262,696 - -0.1 262,754 - -0.4 262,794 + -0.9 262,825 + -0.3 262,975 - Dsui_0263 0.17 -0.2 262,975 - Dsui_0263 0.17 -0.4 263,090 - Dsui_0263 0.28 -0.6 263,250 + Dsui_0263 0.44 +0.7 263,256 + +0.7 263,339 - Dsui_0263 0.52 -0.2 263,388 + Dsui_0263 0.57 +0.7 263,396 - Dsui_0263 0.58 +0.6 263,451 + Dsui_0263 0.63 -2.3 263,523 + +0.7 263,566 - Dsui_0263 0.74 -0.3 263,665 + Dsui_0263 0.84 -0.3 263,702 + +0.7 263,784 - -0.1 263,786 - -0.2 263,827 + +0.7 263,835 - -0.6 263,927 - -0.1 264,072 - -1.3 264,072 - +0.7 264,104 - +0.7 264,119 + -1.9 264,154 + -1.3 264,164 + -1.3 264,164 + -0.3 264,176 + -0.9 264,243 + -2.9 264,243 + +0.7 264,252 - -0.3 264,355 - Dsui_0265 0.17 -0.5 264,364 - Dsui_0265 0.17 +1.3 264,445 - Dsui_0265 0.23 -2.5 264,466 + Dsui_0265 0.24 -1.3 264,520 - Dsui_0265 0.27 -0.3 264,554 + Dsui_0265 0.30 +0.7 264,679 + Dsui_0265 0.38 -1.6 264,718 + Dsui_0265 0.40 -0.3 264,764 + Dsui_0265 0.43 +0.7 264,813 + Dsui_0265 0.46 -0.9
Or see this region's nucleotide sequence