Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS33655

Experiment: L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS33655 and AZOBR_RS33660 are separated by 13 nucleotidesAZOBR_RS33660 and AZOBR_RS33665 are separated by 82 nucleotides AZOBR_RS33655: AZOBR_RS33655 - uridine kinase, at 80,809 to 81,621 _RS33655 AZOBR_RS33660: AZOBR_RS33660 - molybdenum storage protein subunit alpha, at 81,635 to 82,495 _RS33660 AZOBR_RS33665: AZOBR_RS33665 - exported protein of unknown function, at 82,578 to 82,877 _RS33665 Position (kb) 80 81 82Strain fitness (log2 ratio) -2 -1 0 1at 80.301 kb on + strandat 80.302 kb on - strandat 80.424 kb on + strandat 80.424 kb on + strandat 80.424 kb on + strandat 80.425 kb on - strandat 80.425 kb on - strandat 80.435 kb on + strandat 80.435 kb on + strandat 80.436 kb on + strandat 80.671 kb on - strandat 81.064 kb on + strand, within AZOBR_RS33655at 81.064 kb on + strand, within AZOBR_RS33655at 81.064 kb on + strand, within AZOBR_RS33655at 81.230 kb on + strand, within AZOBR_RS33655at 81.262 kb on + strand, within AZOBR_RS33655at 81.263 kb on - strand, within AZOBR_RS33655at 81.368 kb on - strand, within AZOBR_RS33655at 81.368 kb on - strandat 81.368 kb on - strand, within AZOBR_RS33655at 81.392 kb on - strand, within AZOBR_RS33655at 81.914 kb on + strand, within AZOBR_RS33660at 81.915 kb on - strand, within AZOBR_RS33660at 81.915 kb on - strand, within AZOBR_RS33660at 82.031 kb on + strand, within AZOBR_RS33660at 82.032 kb on - strand, within AZOBR_RS33660at 82.032 kb on - strand, within AZOBR_RS33660at 82.115 kb on + strand, within AZOBR_RS33660at 82.239 kb on - strand, within AZOBR_RS33660at 82.239 kb on - strand, within AZOBR_RS33660

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
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80,301 + +0.4
80,302 - -0.1
80,424 + -0.7
80,424 + +0.3
80,424 + -0.2
80,425 - +0.0
80,425 - +0.5
80,435 + +1.2
80,435 + +0.1
80,436 + -0.0
80,671 - +1.0
81,064 + AZOBR_RS33655 0.31 -2.0
81,064 + AZOBR_RS33655 0.31 +0.8
81,064 + AZOBR_RS33655 0.31 -1.8
81,230 + AZOBR_RS33655 0.52 -0.7
81,262 + AZOBR_RS33655 0.56 -1.7
81,263 - AZOBR_RS33655 0.56 +0.7
81,368 - AZOBR_RS33655 0.69 +1.2
81,368 - +1.3
81,368 - AZOBR_RS33655 0.69 -0.2
81,392 - AZOBR_RS33655 0.72 -1.3
81,914 + AZOBR_RS33660 0.32 -0.5
81,915 - AZOBR_RS33660 0.33 +0.0
81,915 - AZOBR_RS33660 0.33 -0.2
82,031 + AZOBR_RS33660 0.46 -0.1
82,032 - AZOBR_RS33660 0.46 -0.1
82,032 - AZOBR_RS33660 0.46 +0.8
82,115 + AZOBR_RS33660 0.56 +0.6
82,239 - AZOBR_RS33660 0.70 +0.4
82,239 - AZOBR_RS33660 0.70 +0.6

Or see this region's nucleotide sequence