Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16710

Experiment: L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS16700 and AZOBR_RS16705 are separated by 107 nucleotidesAZOBR_RS16705 and AZOBR_RS16710 are separated by 2 nucleotidesAZOBR_RS16710 and AZOBR_RS16715 are separated by 2 nucleotides AZOBR_RS16700: AZOBR_RS16700 - precorrin-3B C17-methyltransferase, at 505,354 to 506,133 _RS16700 AZOBR_RS16705: AZOBR_RS16705 - cobalt-precorrin-6x reductase, at 506,241 to 506,975 _RS16705 AZOBR_RS16710: AZOBR_RS16710 - precorrin-6Y C5 15-methyltransferase, at 506,978 to 508,225 _RS16710 AZOBR_RS16715: AZOBR_RS16715 - cobalamin biosynthesis protein, at 508,228 to 508,632 _RS16715 Position (kb) 506 507 508 509Strain fitness (log2 ratio) -2 -1 0 1at 506.101 kb on + strandat 506.101 kb on + strandat 506.102 kb on - strandat 506.117 kb on - strandat 506.243 kb on - strandat 506.477 kb on - strand, within AZOBR_RS16705at 506.477 kb on - strand, within AZOBR_RS16705at 506.528 kb on - strand, within AZOBR_RS16705at 507.005 kb on - strandat 507.005 kb on - strandat 507.260 kb on + strand, within AZOBR_RS16710at 507.261 kb on - strand, within AZOBR_RS16710at 508.888 kb on + strandat 509.170 kb on + strandat 509.170 kb on + strandat 509.170 kb on + strandat 509.171 kb on - strandat 509.171 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
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506,101 + -1.3
506,101 + +0.4
506,102 - -0.3
506,117 - +1.2
506,243 - +0.1
506,477 - AZOBR_RS16705 0.32 -1.0
506,477 - AZOBR_RS16705 0.32 -1.4
506,528 - AZOBR_RS16705 0.39 -0.6
507,005 - -0.7
507,005 - -0.6
507,260 + AZOBR_RS16710 0.23 -0.7
507,261 - AZOBR_RS16710 0.23 -2.3
508,888 + -0.6
509,170 + -1.2
509,170 + -0.5
509,170 + -0.4
509,171 - +0.3
509,171 - -0.9

Or see this region's nucleotide sequence