Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS07830

Experiment: L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS07825 and AZOBR_RS07830 are separated by 301 nucleotidesAZOBR_RS07830 and AZOBR_RS07835 overlap by 1 nucleotides AZOBR_RS07825: AZOBR_RS07825 - multidrug transporter CflA, at 1,648,545 to 1,649,744 _RS07825 AZOBR_RS07830: AZOBR_RS07830 - aminotransferase, at 1,650,046 to 1,651,320 _RS07830 AZOBR_RS07835: AZOBR_RS07835 - homoserine dehydrogenase, at 1,651,320 to 1,652,627 _RS07835 Position (kb) 1650 1651 1652Strain fitness (log2 ratio) -3 -2 -1 0 1at 1649.083 kb on - strand, within AZOBR_RS07825at 1649.253 kb on + strand, within AZOBR_RS07825at 1649.254 kb on - strand, within AZOBR_RS07825at 1649.350 kb on - strand, within AZOBR_RS07825at 1649.350 kb on - strand, within AZOBR_RS07825at 1649.670 kb on + strandat 1649.671 kb on - strandat 1649.913 kb on - strandat 1650.005 kb on + strandat 1650.868 kb on + strand, within AZOBR_RS07830at 1650.961 kb on + strand, within AZOBR_RS07830

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
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1,649,083 - AZOBR_RS07825 0.45 -0.3
1,649,253 + AZOBR_RS07825 0.59 +0.4
1,649,254 - AZOBR_RS07825 0.59 -0.3
1,649,350 - AZOBR_RS07825 0.67 -1.3
1,649,350 - AZOBR_RS07825 0.67 +0.4
1,649,670 + +0.0
1,649,671 - +0.0
1,649,913 - -0.5
1,650,005 + +0.2
1,650,868 + AZOBR_RS07830 0.64 -2.6
1,650,961 + AZOBR_RS07830 0.72 -3.2

Or see this region's nucleotide sequence