Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22180

Experiment: D-Alanine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Alanine (C)
4,856,870	+		AO353_22175	0.58	-0.2
4,856,870	+		AO353_22175	0.58	-0.5
4,856,870	+		AO353_22175	0.58	-0.0
4,856,871	-		AO353_22175	0.58	-1.4
4,856,871	-		AO353_22175	0.58	-0.4
4,856,933	+		AO353_22175	0.63	+0.7
4,856,933	+		AO353_22175	0.63	-1.0
4,856,933	+		AO353_22175	0.63	-1.0
4,856,933	+		AO353_22175	0.63	+2.6
4,856,933	+		AO353_22175	0.63	+0.4
4,856,933	+		AO353_22175	0.63	-0.2
4,856,934	-		AO353_22175	0.63	+0.9
4,857,026	+		AO353_22175	0.69	-1.5
4,857,026	+		AO353_22175	0.69	+1.9
4,857,026	+		AO353_22175	0.69	-0.6
4,857,026	+		AO353_22175	0.69	-0.0
4,857,026	+		AO353_22175	0.69	+0.1
4,857,026	+		AO353_22175	0.69	+0.5
4,857,026	+		AO353_22175	0.69	-1.2
4,857,027	-		AO353_22175	0.70	-1.3
4,857,027	-		AO353_22175	0.70	-0.6
4,857,027	-		AO353_22175	0.70	-0.5
4,857,113	+		AO353_22175	0.76	+2.4
4,857,113	+		AO353_22175	0.76	-0.6
4,857,113	+		AO353_22175	0.76	-0.1
4,857,113	+		AO353_22175	0.76	+0.1
4,857,113	+		AO353_22175	0.76	-0.6
4,857,113	+		AO353_22175	0.76	+0.3
4,857,113	+		AO353_22175	0.76	-1.7
4,857,114	-				-0.2
4,857,114	-		AO353_22175	0.76	-2.9
4,857,114	-		AO353_22175	0.76	+0.9
4,857,114	-		AO353_22175	0.76	-0.1
4,857,114	-		AO353_22175	0.76	+0.6
4,857,114	-		AO353_22175	0.76	+1.2
4,857,251	+		AO353_22175	0.86	+0.4
4,857,252	-		AO353_22175	0.86	+1.7
4,857,282	+		AO353_22175	0.88	-0.8
4,857,282	+		AO353_22175	0.88	-0.3
4,857,282	+		AO353_22175	0.88	-0.0
4,857,283	-		AO353_22175	0.88	-1.5
4,857,283	-		AO353_22175	0.88	-0.4
4,857,413	+				-0.4
4,857,413	+				+0.4
4,857,414	-				+0.7
4,857,414	-				-0.9
4,857,414	-				-0.9
4,857,465	+				-0.9
4,857,466	-				-1.0
4,857,471	+				-0.5
4,857,472	-				-2.2
4,857,472	-				-0.8
4,857,657	+				-0.6
4,857,710	+				-0.3
4,857,710	+				-2.5
4,857,710	+				+0.8
4,857,711	-				+0.4
4,857,711	-				+2.0
4,857,711	-				+0.4
4,857,711	-				-0.0
4,857,711	-				+1.8
4,857,711	-				-0.9
4,857,711	-				-0.9
4,857,711	-				-0.0
4,857,711	-				-0.4
4,858,120	-		AO353_22180	0.25	+0.1
4,858,121	+		AO353_22180	0.25	+1.0
4,858,122	-		AO353_22180	0.25	-2.0
4,858,122	-		AO353_22180	0.25	-0.5
4,858,122	-		AO353_22180	0.25	-0.3
4,858,122	-		AO353_22180	0.25	-1.8
4,858,122	-		AO353_22180	0.25	+0.3
4,858,122	-		AO353_22180	0.25	-0.1
4,858,122	-		AO353_22180	0.25	-2.7
4,858,386	+		AO353_22180	0.50	-1.2
4,858,387	-		AO353_22180	0.50	-0.3
4,858,451	+		AO353_22180	0.57	-2.1
4,858,451	+		AO353_22180	0.57	-0.6
4,858,452	-		AO353_22180	0.57	+0.3
4,858,452	-		AO353_22180	0.57	-1.0
4,858,452	-		AO353_22180	0.57	-0.8
4,858,601	-		AO353_22180	0.71	-0.0
4,858,601	-		AO353_22180	0.71	-1.4
4,858,623	+		AO353_22180	0.73	-1.7
4,858,623	+		AO353_22180	0.73	-0.6
4,858,815	+				-0.2
4,858,816	-				+0.6
4,858,861	-				-0.5
4,858,863	+				+0.4
4,858,863	+				-1.0
4,858,863	+				-1.4
4,858,864	-				+0.4
4,858,923	+				+0.4
4,858,923	+				-0.1
4,858,923	+				+1.0
4,858,923	+				+0.3
4,858,929	+				-1.0
4,858,929	+				-1.0
4,858,929	+				-0.9
4,858,929	+				+0.7
4,858,929	+				-0.9
4,858,929	+				-1.0
4,858,929	+				-0.4
4,858,929	+				-0.8
4,858,930	-				+1.3
4,858,930	-				-1.0
4,858,930	-				+0.8
4,858,930	-				+0.6
4,858,930	-				+0.7
4,859,053	+		AO353_22185	0.15	-0.0
4,859,053	+		AO353_22185	0.15	+0.3
4,859,053	+		AO353_22185	0.15	-1.1
4,859,053	+		AO353_22185	0.15	+0.3
4,859,054	-		AO353_22185	0.15	+0.2
4,859,054	-		AO353_22185	0.15	+0.3
4,859,054	-		AO353_22185	0.15	-2.6
4,859,054	-		AO353_22185	0.15	-1.0
4,859,119	-		AO353_22185	0.23	-0.0
4,859,144	+		AO353_22185	0.26	-0.6
4,859,144	+		AO353_22185	0.26	-1.0
4,859,144	+		AO353_22185	0.26	-0.8
4,859,144	+		AO353_22185	0.26	-0.8
4,859,144	+		AO353_22185	0.26	+0.3
4,859,144	+		AO353_22185	0.26	+0.5
4,859,144	+		AO353_22185	0.26	-0.1
4,859,145	-		AO353_22185	0.26	-0.8
4,859,145	-		AO353_22185	0.26	-0.7
4,859,145	-		AO353_22185	0.26	+0.2
4,859,155	+		AO353_22185	0.28	+0.2
4,859,155	+		AO353_22185	0.28	+0.2
4,859,155	+		AO353_22185	0.28	-0.3
4,859,156	-		AO353_22185	0.28	-0.8
4,859,156	-		AO353_22185	0.28	-0.8
4,859,156	-		AO353_22185	0.28	+0.6
4,859,156	-		AO353_22185	0.28	-0.5
4,859,173	+		AO353_22185	0.30	+1.8
4,859,173	+		AO353_22185	0.30	+1.9
4,859,174	-		AO353_22185	0.30	-1.3
4,859,251	+		AO353_22185	0.39	-0.4
4,859,251	+		AO353_22185	0.39	-0.5
4,859,251	+		AO353_22185	0.39	-0.4
4,859,251	+		AO353_22185	0.39	-0.2
4,859,251	+		AO353_22185	0.39	+0.1
4,859,251	+		AO353_22185	0.39	-1.7
4,859,251	+		AO353_22185	0.39	+0.8
4,859,251	+		AO353_22185	0.39	-0.2
4,859,252	-		AO353_22185	0.39	+0.3
4,859,252	-		AO353_22185	0.39	-0.9
4,859,252	-		AO353_22185	0.39	-1.9
4,859,252	-		AO353_22185	0.39	-1.6
4,859,300	+		AO353_22185	0.45	+0.9
4,859,341	+		AO353_22185	0.50	-1.8
4,859,341	+		AO353_22185	0.50	-0.2
4,859,342	-		AO353_22185	0.50	-0.2
4,859,342	-		AO353_22185	0.50	-1.2
4,859,510	+		AO353_22185	0.71	-1.2
4,859,510	+		AO353_22185	0.71	-0.2
4,859,511	-		AO353_22185	0.71	+1.2
4,859,521	+		AO353_22185	0.72	+2.0
4,859,522	-		AO353_22185	0.73	+1.1
4,859,522	-		AO353_22185	0.73	-1.8
4,859,522	-		AO353_22185	0.73	-1.4
4,859,522	-		AO353_22185	0.73	-0.0
4,859,522	-		AO353_22185	0.73	-0.0
4,859,864	+		AO353_22190	0.12	+0.9