Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00475 and AO353_00480 are separated by 170 nucleotides AO353_00480 and AO353_00485 are separated by 3 nucleotides AO353_00485 and AO353_00490 are separated by 48 nucleotides AO353_00490 and AO353_00495 are separated by 143 nucleotides
AO353_00475: AO353_00475 - hypothetical protein, at 96,110 to 96,343
_00475
AO353_00480: AO353_00480 - hypothetical protein, at 96,514 to 97,071
_00480
AO353_00485: AO353_00485 - hypothetical protein, at 97,075 to 98,109
_00485
AO353_00490: AO353_00490 - PasA protein, at 98,158 to 98,682
_00490
AO353_00495: AO353_00495 - DNA topoisomerase I, at 98,826 to 101,447
_00495
Position (kb) 97
98
99 Strain fitness (log2 ratio) -2
-1
0
1
2 at 96.326 kb on + strand at 96.327 kb on - strand at 96.327 kb on - strand at 96.343 kb on + strand at 96.343 kb on + strand at 96.343 kb on + strand at 96.344 kb on - strand at 96.344 kb on - strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.378 kb on + strand at 96.378 kb on + strand at 96.378 kb on + strand at 96.378 kb on + strand at 96.378 kb on + strand at 96.378 kb on + strand at 96.379 kb on - strand at 96.379 kb on - strand at 96.433 kb on + strand at 96.477 kb on + strand at 96.531 kb on - strand at 96.531 kb on - strand at 96.601 kb on - strand, within AO353_00480 at 96.601 kb on - strand, within AO353_00480 at 96.612 kb on + strand, within AO353_00480 at 96.613 kb on - strand, within AO353_00480 at 96.658 kb on - strand, within AO353_00480 at 96.811 kb on + strand, within AO353_00480 at 96.812 kb on - strand, within AO353_00480 at 96.893 kb on + strand, within AO353_00480 at 96.893 kb on + strand, within AO353_00480 at 96.893 kb on + strand, within AO353_00480 at 96.894 kb on - strand at 96.894 kb on - strand, within AO353_00480 at 96.894 kb on - strand, within AO353_00480 at 96.894 kb on - strand, within AO353_00480 at 96.957 kb on - strand, within AO353_00480 at 96.957 kb on - strand, within AO353_00480 at 97.005 kb on + strand, within AO353_00480 at 97.006 kb on - strand, within AO353_00480 at 97.016 kb on + strand at 97.017 kb on - strand at 97.017 kb on - strand at 97.076 kb on + strand at 97.079 kb on + strand at 97.079 kb on + strand at 97.079 kb on + strand at 97.079 kb on + strand at 97.079 kb on + strand at 97.080 kb on - strand at 97.080 kb on - strand at 97.207 kb on - strand, within AO353_00485 at 97.252 kb on + strand, within AO353_00485 at 97.252 kb on + strand, within AO353_00485 at 97.253 kb on - strand, within AO353_00485 at 97.392 kb on + strand, within AO353_00485 at 97.393 kb on - strand, within AO353_00485 at 97.434 kb on + strand, within AO353_00485 at 97.435 kb on - strand, within AO353_00485 at 97.522 kb on - strand, within AO353_00485 at 97.539 kb on + strand, within AO353_00485 at 97.540 kb on - strand, within AO353_00485 at 97.540 kb on - strand, within AO353_00485 at 97.546 kb on + strand at 97.547 kb on - strand, within AO353_00485 at 97.612 kb on + strand, within AO353_00485 at 97.612 kb on + strand, within AO353_00485 at 97.613 kb on - strand, within AO353_00485 at 97.613 kb on - strand, within AO353_00485 at 97.613 kb on - strand, within AO353_00485 at 97.613 kb on - strand, within AO353_00485 at 97.616 kb on + strand, within AO353_00485 at 97.617 kb on - strand, within AO353_00485 at 97.617 kb on - strand, within AO353_00485 at 97.632 kb on - strand, within AO353_00485 at 97.632 kb on - strand, within AO353_00485 at 97.744 kb on + strand, within AO353_00485 at 97.744 kb on + strand, within AO353_00485 at 97.745 kb on - strand, within AO353_00485 at 97.745 kb on - strand, within AO353_00485 at 97.784 kb on + strand, within AO353_00485 at 97.785 kb on - strand, within AO353_00485 at 97.785 kb on - strand, within AO353_00485 at 97.785 kb on - strand, within AO353_00485 at 97.894 kb on + strand, within AO353_00485 at 97.895 kb on - strand, within AO353_00485 at 97.903 kb on + strand, within AO353_00485 at 97.904 kb on - strand, within AO353_00485 at 97.968 kb on + strand, within AO353_00485 at 97.971 kb on + strand, within AO353_00485 at 97.971 kb on + strand, within AO353_00485 at 97.972 kb on - strand, within AO353_00485 at 97.978 kb on + strand, within AO353_00485 at 97.979 kb on - strand, within AO353_00485 at 97.979 kb on - strand, within AO353_00485 at 98.010 kb on + strand at 98.151 kb on + strand at 98.151 kb on + strand at 98.152 kb on - strand at 98.155 kb on + strand at 98.155 kb on + strand at 98.155 kb on + strand at 98.155 kb on + strand at 98.155 kb on + strand at 98.155 kb on + strand at 98.155 kb on + strand at 98.155 kb on + strand at 98.155 kb on + strand at 98.155 kb on + strand at 98.155 kb on + strand at 98.155 kb on + strand at 98.155 kb on + strand at 98.156 kb on - strand at 98.156 kb on - strand at 98.156 kb on - strand at 98.156 kb on - strand at 98.156 kb on - strand at 98.156 kb on - strand at 98.156 kb on - strand at 98.156 kb on - strand at 98.156 kb on - strand at 98.156 kb on - strand at 98.156 kb on - strand at 98.159 kb on + strand at 98.159 kb on + strand at 98.159 kb on + strand at 98.159 kb on + strand at 98.159 kb on + strand at 98.159 kb on + strand at 98.160 kb on - strand at 98.160 kb on - strand at 98.160 kb on - strand at 98.160 kb on - strand at 98.271 kb on + strand, within AO353_00490 at 98.492 kb on + strand, within AO353_00490 at 98.534 kb on + strand, within AO353_00490 at 98.535 kb on - strand, within AO353_00490 at 98.535 kb on - strand, within AO353_00490 at 98.642 kb on + strand at 98.664 kb on + strand at 98.664 kb on + strand at 98.666 kb on + strand at 98.666 kb on + strand at 98.666 kb on + strand at 98.666 kb on + strand at 98.667 kb on - strand at 98.667 kb on - strand at 98.667 kb on - strand at 98.667 kb on - strand at 98.667 kb on - strand at 98.667 kb on - strand at 98.667 kb on - strand at 98.705 kb on + strand at 98.705 kb on + strand at 98.705 kb on + strand at 98.706 kb on - strand at 98.706 kb on - strand at 98.714 kb on + strand at 98.714 kb on + strand at 98.828 kb on - strand at 98.828 kb on - strand at 98.920 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 96,326 + -1.3 96,327 - +0.6 96,327 - -0.0 96,343 + +0.7 96,343 + +0.4 96,343 + +0.3 96,344 - -0.2 96,344 - -0.3 96,374 + +1.6 96,374 + -1.4 96,374 + +0.4 96,374 + -0.4 96,374 + -0.3 96,374 + +1.0 96,374 + +0.3 96,374 + +0.4 96,374 + -0.1 96,374 + -0.0 96,375 - +0.5 96,375 - +0.6 96,375 - -0.4 96,375 - +0.2 96,375 - -0.4 96,375 - +0.6 96,375 - -1.1 96,375 - -0.5 96,375 - -0.7 96,375 - +0.3 96,375 - +0.8 96,375 - -1.7 96,375 - -0.8 96,375 - -0.0 96,375 - -0.0 96,376 + -1.6 96,376 + -0.0 96,376 + +1.0 96,376 + -0.5 96,376 + +2.6 96,376 + -0.1 96,376 + +1.0 96,376 + -0.7 96,376 + +0.3 96,376 + +0.2 96,376 + -0.8 96,377 - +0.1 96,377 - +0.6 96,377 - -0.0 96,377 - +0.4 96,377 - -0.3 96,377 - -0.6 96,377 - -0.2 96,377 - -1.5 96,377 - +0.7 96,377 - +1.1 96,377 - -0.5 96,377 - -0.4 96,377 - +0.3 96,377 - -0.0 96,377 - -0.7 96,377 - +1.6 96,377 - -1.1 96,377 - -1.9 96,377 - -0.4 96,377 - -1.3 96,377 - +2.0 96,377 - -0.8 96,377 - +0.3 96,377 - -1.8 96,377 - -0.7 96,378 + -0.0 96,378 + +0.6 96,378 + +0.4 96,378 + -0.1 96,378 + -0.8 96,378 + +0.6 96,379 - -0.3 96,379 - -0.9 96,433 + +0.2 96,477 + -0.5 96,531 - -0.4 96,531 - -0.1 96,601 - AO353_00480 0.16 +0.2 96,601 - AO353_00480 0.16 -0.0 96,612 + AO353_00480 0.18 -0.4 96,613 - AO353_00480 0.18 +1.2 96,658 - AO353_00480 0.26 -1.1 96,811 + AO353_00480 0.53 -0.4 96,812 - AO353_00480 0.53 -0.3 96,893 + AO353_00480 0.68 -0.1 96,893 + AO353_00480 0.68 +2.6 96,893 + AO353_00480 0.68 +0.4 96,894 - +0.7 96,894 - AO353_00480 0.68 -0.9 96,894 - AO353_00480 0.68 -0.3 96,894 - AO353_00480 0.68 +0.2 96,957 - AO353_00480 0.79 +0.6 96,957 - AO353_00480 0.79 -2.0 97,005 + AO353_00480 0.88 -0.3 97,006 - AO353_00480 0.88 +0.4 97,016 + +0.6 97,017 - +0.3 97,017 - +0.2 97,076 + -0.2 97,079 + -0.9 97,079 + +0.6 97,079 + +0.7 97,079 + -2.1 97,079 + -1.1 97,080 - +0.6 97,080 - +1.6 97,207 - AO353_00485 0.13 -0.5 97,252 + AO353_00485 0.17 -1.1 97,252 + AO353_00485 0.17 +0.5 97,253 - AO353_00485 0.17 +0.8 97,392 + AO353_00485 0.31 -0.7 97,393 - AO353_00485 0.31 +0.6 97,434 + AO353_00485 0.35 -0.4 97,435 - AO353_00485 0.35 +0.5 97,522 - AO353_00485 0.43 -0.0 97,539 + AO353_00485 0.45 -1.9 97,540 - AO353_00485 0.45 +0.1 97,540 - AO353_00485 0.45 -0.9 97,546 + -0.0 97,547 - AO353_00485 0.46 -0.8 97,612 + AO353_00485 0.52 -0.8 97,612 + AO353_00485 0.52 -0.2 97,613 - AO353_00485 0.52 -0.3 97,613 - AO353_00485 0.52 +0.6 97,613 - AO353_00485 0.52 -0.9 97,613 - AO353_00485 0.52 +0.7 97,616 + AO353_00485 0.52 +0.3 97,617 - AO353_00485 0.52 -0.3 97,617 - AO353_00485 0.52 -0.9 97,632 - AO353_00485 0.54 -0.4 97,632 - AO353_00485 0.54 +0.7 97,744 + AO353_00485 0.65 -1.2 97,744 + AO353_00485 0.65 +0.2 97,745 - AO353_00485 0.65 +0.1 97,745 - AO353_00485 0.65 -0.1 97,784 + AO353_00485 0.69 -0.4 97,785 - AO353_00485 0.69 +0.7 97,785 - AO353_00485 0.69 -1.1 97,785 - AO353_00485 0.69 -0.8 97,894 + AO353_00485 0.79 +0.7 97,895 - AO353_00485 0.79 +0.7 97,903 + AO353_00485 0.80 +0.7 97,904 - AO353_00485 0.80 -0.3 97,968 + AO353_00485 0.86 +0.4 97,971 + AO353_00485 0.87 +0.2 97,971 + AO353_00485 0.87 -0.3 97,972 - AO353_00485 0.87 -0.9 97,978 + AO353_00485 0.87 -0.2 97,979 - AO353_00485 0.87 +0.6 97,979 - AO353_00485 0.87 -2.4 98,010 + -0.4 98,151 + -0.4 98,151 + -2.6 98,152 - -0.0 98,155 + -1.4 98,155 + +1.0 98,155 + -1.1 98,155 + +1.0 98,155 + -0.4 98,155 + +1.1 98,155 + +0.6 98,155 + +0.4 98,155 + -2.1 98,155 + +1.4 98,155 + -0.8 98,155 + -0.6 98,155 + +0.2 98,156 - +1.0 98,156 - +0.4 98,156 - -0.4 98,156 - -0.9 98,156 - +0.2 98,156 - -0.3 98,156 - -1.4 98,156 - -1.0 98,156 - +0.2 98,156 - -0.8 98,156 - +0.2 98,159 + -0.4 98,159 + +1.6 98,159 + -1.4 98,159 + -0.1 98,159 + +0.1 98,159 + +0.6 98,160 - -0.0 98,160 - -0.6 98,160 - +0.4 98,160 - -1.4 98,271 + AO353_00490 0.22 -0.5 98,492 + AO353_00490 0.64 -1.3 98,534 + AO353_00490 0.72 -0.9 98,535 - AO353_00490 0.72 -2.6 98,535 - AO353_00490 0.72 -1.3 98,642 + +0.1 98,664 + -2.2 98,664 + -0.2 98,666 + +0.1 98,666 + -0.4 98,666 + -1.0 98,666 + +0.1 98,667 - -2.2 98,667 - +0.2 98,667 - -1.5 98,667 - -1.1 98,667 - -0.8 98,667 - -1.0 98,667 - -1.4 98,705 + +0.1 98,705 + -0.3 98,705 + -0.7 98,706 - +0.4 98,706 - +0.6 98,714 + -0.6 98,714 + +1.6 98,828 - -0.5 98,828 - -0.3 98,920 + -1.4
Or see this region's nucleotide sequence