Experiment: Carbon source Sucrose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3105 and Shewana3_3106 are separated by 280 nucleotides Shewana3_3106 and Shewana3_3107 are separated by 50 nucleotides
Shewana3_3105: Shewana3_3105 - aldehyde dehydrogenase (acceptor) (RefSeq), at 3,723,574 to 3,725,070
_3105
Shewana3_3106: Shewana3_3106 - beta alanine--pyruvate transaminase (RefSeq), at 3,725,351 to 3,726,691
_3106
Shewana3_3107: Shewana3_3107 - methylmalonate-semialdehyde dehydrogenase [acylating] (RefSeq), at 3,726,742 to 3,728,232
_3107
Position (kb)
3725
3726
3727 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3724.424 kb on + strand, within Shewana3_3105 at 3724.424 kb on + strand, within Shewana3_3105 at 3724.514 kb on + strand, within Shewana3_3105 at 3724.599 kb on - strand, within Shewana3_3105 at 3724.871 kb on - strand, within Shewana3_3105 at 3724.871 kb on - strand, within Shewana3_3105 at 3724.997 kb on + strand at 3725.158 kb on + strand at 3725.171 kb on + strand at 3725.251 kb on - strand at 3725.317 kb on - strand at 3725.317 kb on - strand at 3725.371 kb on - strand at 3725.501 kb on + strand, within Shewana3_3106 at 3725.672 kb on - strand, within Shewana3_3106 at 3725.706 kb on - strand, within Shewana3_3106 at 3725.787 kb on + strand, within Shewana3_3106 at 3725.797 kb on + strand, within Shewana3_3106 at 3725.883 kb on + strand, within Shewana3_3106 at 3725.912 kb on - strand, within Shewana3_3106 at 3725.969 kb on + strand, within Shewana3_3106 at 3725.970 kb on + strand, within Shewana3_3106 at 3725.990 kb on + strand, within Shewana3_3106 at 3725.990 kb on + strand, within Shewana3_3106 at 3726.291 kb on + strand, within Shewana3_3106 at 3726.318 kb on + strand, within Shewana3_3106 at 3726.413 kb on - strand, within Shewana3_3106 at 3726.413 kb on - strand, within Shewana3_3106 at 3726.561 kb on + strand at 3726.561 kb on + strand at 3726.659 kb on + strand at 3726.996 kb on + strand, within Shewana3_3107 at 3727.047 kb on - strand, within Shewana3_3107 at 3727.252 kb on - strand, within Shewana3_3107 at 3727.311 kb on + strand, within Shewana3_3107 at 3727.364 kb on + strand, within Shewana3_3107 at 3727.437 kb on + strand, within Shewana3_3107 at 3727.555 kb on + strand, within Shewana3_3107 at 3727.563 kb on - strand, within Shewana3_3107 at 3727.573 kb on - strand, within Shewana3_3107
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM remove 3,724,424 + Shewana3_3105 0.57 -0.3 3,724,424 + Shewana3_3105 0.57 -1.9 3,724,514 + Shewana3_3105 0.63 +0.8 3,724,599 - Shewana3_3105 0.68 +0.7 3,724,871 - Shewana3_3105 0.87 +0.5 3,724,871 - Shewana3_3105 0.87 -0.0 3,724,997 + -1.7 3,725,158 + +0.1 3,725,171 + -0.1 3,725,251 - +0.4 3,725,317 - -0.4 3,725,317 - -0.6 3,725,371 - -1.0 3,725,501 + Shewana3_3106 0.11 +0.3 3,725,672 - Shewana3_3106 0.24 +0.7 3,725,706 - Shewana3_3106 0.26 +0.8 3,725,787 + Shewana3_3106 0.33 +0.2 3,725,797 + Shewana3_3106 0.33 +0.4 3,725,883 + Shewana3_3106 0.40 +0.9 3,725,912 - Shewana3_3106 0.42 -0.5 3,725,969 + Shewana3_3106 0.46 -0.6 3,725,970 + Shewana3_3106 0.46 -0.3 3,725,990 + Shewana3_3106 0.48 -0.2 3,725,990 + Shewana3_3106 0.48 -0.1 3,726,291 + Shewana3_3106 0.70 -0.2 3,726,318 + Shewana3_3106 0.72 -3.0 3,726,413 - Shewana3_3106 0.79 +0.2 3,726,413 - Shewana3_3106 0.79 -0.2 3,726,561 + +0.0 3,726,561 + -2.7 3,726,659 + +0.2 3,726,996 + Shewana3_3107 0.17 -0.8 3,727,047 - Shewana3_3107 0.20 +0.5 3,727,252 - Shewana3_3107 0.34 +0.1 3,727,311 + Shewana3_3107 0.38 +0.4 3,727,364 + Shewana3_3107 0.42 -0.8 3,727,437 + Shewana3_3107 0.47 -0.7 3,727,555 + Shewana3_3107 0.55 -0.2 3,727,563 - Shewana3_3107 0.55 +0.1 3,727,573 - Shewana3_3107 0.56 -1.1
Or see this region's nucleotide sequence