Experiment: Carbon source Sucrose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2761 and Shewana3_2762 are separated by 136 nucleotides Shewana3_2762 and Shewana3_2763 are separated by 102 nucleotides
Shewana3_2761: Shewana3_2761 - copper-translocating P-type ATPase (RefSeq), at 3,298,139 to 3,300,400
_2761
Shewana3_2762: Shewana3_2762 - MerR family transcriptional regulator (RefSeq), at 3,300,537 to 3,300,926
_2762
Shewana3_2763: Shewana3_2763 - peptidase S9 prolyl oligopeptidase (RefSeq), at 3,301,029 to 3,303,062
_2763
Position (kb)
3300
3301 Strain fitness (log2 ratio)
-1
0
1 at 3299.582 kb on - strand, within Shewana3_2761 at 3299.628 kb on + strand, within Shewana3_2761 at 3299.645 kb on + strand, within Shewana3_2761 at 3299.664 kb on + strand, within Shewana3_2761 at 3299.838 kb on - strand, within Shewana3_2761 at 3299.887 kb on + strand, within Shewana3_2761 at 3299.887 kb on + strand, within Shewana3_2761 at 3299.900 kb on - strand, within Shewana3_2761 at 3299.900 kb on - strand, within Shewana3_2761 at 3299.900 kb on - strand, within Shewana3_2761 at 3299.997 kb on - strand, within Shewana3_2761 at 3300.509 kb on + strand at 3300.567 kb on + strand at 3300.567 kb on + strand at 3300.575 kb on - strand at 3300.619 kb on - strand, within Shewana3_2762 at 3301.138 kb on + strand at 3301.146 kb on - strand at 3301.258 kb on - strand, within Shewana3_2763 at 3301.530 kb on + strand, within Shewana3_2763 at 3301.542 kb on + strand, within Shewana3_2763 at 3301.542 kb on + strand, within Shewana3_2763 at 3301.632 kb on + strand, within Shewana3_2763 at 3301.721 kb on - strand, within Shewana3_2763 at 3301.748 kb on + strand, within Shewana3_2763 at 3301.888 kb on + strand, within Shewana3_2763 at 3301.913 kb on - strand, within Shewana3_2763
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM remove 3,299,582 - Shewana3_2761 0.64 -1.0 3,299,628 + Shewana3_2761 0.66 +0.7 3,299,645 + Shewana3_2761 0.67 -0.3 3,299,664 + Shewana3_2761 0.67 +0.9 3,299,838 - Shewana3_2761 0.75 -0.3 3,299,887 + Shewana3_2761 0.77 +0.7 3,299,887 + Shewana3_2761 0.77 -0.2 3,299,900 - Shewana3_2761 0.78 -0.7 3,299,900 - Shewana3_2761 0.78 +0.3 3,299,900 - Shewana3_2761 0.78 +1.5 3,299,997 - Shewana3_2761 0.82 +0.6 3,300,509 + +0.5 3,300,567 + -0.5 3,300,567 + +0.2 3,300,575 - -1.3 3,300,619 - Shewana3_2762 0.21 -0.7 3,301,138 + +0.4 3,301,146 - -0.7 3,301,258 - Shewana3_2763 0.11 -0.1 3,301,530 + Shewana3_2763 0.25 +0.6 3,301,542 + Shewana3_2763 0.25 +0.3 3,301,542 + Shewana3_2763 0.25 -0.1 3,301,632 + Shewana3_2763 0.30 +0.6 3,301,721 - Shewana3_2763 0.34 -0.0 3,301,748 + Shewana3_2763 0.35 +0.9 3,301,888 + Shewana3_2763 0.42 +0.5 3,301,913 - Shewana3_2763 0.43 +1.1
Or see this region's nucleotide sequence