Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2386

Experiment: Carbon source Sucrose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2385 and Shewana3_2386 are separated by 14 nucleotidesShewana3_2386 and Shewana3_2387 are separated by 199 nucleotides Shewana3_2385: Shewana3_2385 - ribonuclease D (RefSeq), at 2,863,731 to 2,864,897 _2385 Shewana3_2386: Shewana3_2386 - long-chain-fatty-acid--CoA ligase (RefSeq), at 2,864,912 to 2,866,585 _2386 Shewana3_2387: Shewana3_2387 - alpha/beta hydrolase fold (RefSeq), at 2,866,785 to 2,867,651 _2387 Position (kb) 2864 2865 2866 2867Strain fitness (log2 ratio) -2 -1 0 1at 2864.253 kb on - strand, within Shewana3_2385at 2864.386 kb on + strand, within Shewana3_2385at 2864.388 kb on + strand, within Shewana3_2385at 2864.487 kb on + strand, within Shewana3_2385at 2864.495 kb on - strand, within Shewana3_2385at 2864.550 kb on - strand, within Shewana3_2385at 2864.635 kb on + strand, within Shewana3_2385at 2864.687 kb on - strand, within Shewana3_2385at 2864.717 kb on + strand, within Shewana3_2385at 2864.870 kb on - strandat 2865.400 kb on - strand, within Shewana3_2386at 2865.875 kb on - strand, within Shewana3_2386at 2866.198 kb on - strand, within Shewana3_2386at 2866.268 kb on - strand, within Shewana3_2386at 2866.849 kb on - strandat 2866.865 kb on + strandat 2866.873 kb on - strand, within Shewana3_2387at 2867.309 kb on - strand, within Shewana3_2387

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM
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2,864,253 - Shewana3_2385 0.45 -0.8
2,864,386 + Shewana3_2385 0.56 +0.9
2,864,388 + Shewana3_2385 0.56 +0.1
2,864,487 + Shewana3_2385 0.65 +0.7
2,864,495 - Shewana3_2385 0.65 -0.2
2,864,550 - Shewana3_2385 0.70 -0.2
2,864,635 + Shewana3_2385 0.77 -1.2
2,864,687 - Shewana3_2385 0.82 +0.1
2,864,717 + Shewana3_2385 0.84 -0.7
2,864,870 - +0.4
2,865,400 - Shewana3_2386 0.29 +0.8
2,865,875 - Shewana3_2386 0.58 -2.5
2,866,198 - Shewana3_2386 0.77 -2.0
2,866,268 - Shewana3_2386 0.81 +0.8
2,866,849 - -0.5
2,866,865 + -2.2
2,866,873 - Shewana3_2387 0.10 +0.6
2,867,309 - Shewana3_2387 0.60 +0.4

Or see this region's nucleotide sequence