Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2332

Experiment: Carbon source Sucrose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2330 and Shewana3_2331 are separated by 74 nucleotidesShewana3_2331 and Shewana3_2332 are separated by 6 nucleotidesShewana3_2332 and Shewana3_2333 are separated by 10 nucleotides Shewana3_2330: Shewana3_2330 - glyceraldehyde-3-phosphate dehydrogenase (RefSeq), at 2,806,888 to 2,807,898 _2330 Shewana3_2331: Shewana3_2331 - protein tyrosine phosphatase, catalytic region (RefSeq), at 2,807,973 to 2,808,464 _2331 Shewana3_2332: Shewana3_2332 - redox-active disulfide protein 2 (RefSeq), at 2,808,471 to 2,808,707 _2332 Shewana3_2333: Shewana3_2333 - permease (RefSeq), at 2,808,718 to 2,809,716 _2333 Position (kb) 2808 2809Strain fitness (log2 ratio) -2 -1 0 1at 2807.522 kb on + strand, within Shewana3_2330at 2807.668 kb on - strand, within Shewana3_2330at 2807.740 kb on + strandat 2807.847 kb on + strandat 2807.855 kb on - strandat 2808.121 kb on - strand, within Shewana3_2331at 2808.203 kb on - strand, within Shewana3_2331at 2808.203 kb on - strand, within Shewana3_2331at 2808.293 kb on + strand, within Shewana3_2331at 2808.293 kb on + strand, within Shewana3_2331at 2808.293 kb on + strand, within Shewana3_2331at 2808.567 kb on + strand, within Shewana3_2332at 2808.666 kb on - strand, within Shewana3_2332at 2808.996 kb on - strand, within Shewana3_2333at 2809.454 kb on - strand, within Shewana3_2333

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM
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2,807,522 + Shewana3_2330 0.63 -0.3
2,807,668 - Shewana3_2330 0.77 -0.3
2,807,740 + +0.5
2,807,847 + -0.1
2,807,855 - -0.9
2,808,121 - Shewana3_2331 0.30 +0.1
2,808,203 - Shewana3_2331 0.47 -0.4
2,808,203 - Shewana3_2331 0.47 +0.4
2,808,293 + Shewana3_2331 0.65 -1.2
2,808,293 + Shewana3_2331 0.65 -2.4
2,808,293 + Shewana3_2331 0.65 +0.2
2,808,567 + Shewana3_2332 0.41 -1.3
2,808,666 - Shewana3_2332 0.82 -0.3
2,808,996 - Shewana3_2333 0.28 +0.3
2,809,454 - Shewana3_2333 0.74 +0.5

Or see this region's nucleotide sequence