Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2121

Experiment: Carbon source Sucrose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2120 and Shewana3_2121 are separated by 164 nucleotidesShewana3_2121 and Shewana3_R0089 are separated by 293 nucleotidesShewana3_R0089 and Shewana3_R0090 are separated by 49 nucleotidesShewana3_R0090 and Shewana3_R0091 are separated by 23 nucleotidesShewana3_R0091 and Shewana3_2122 are separated by 325 nucleotides Shewana3_2120: Shewana3_2120 - hypothetical protein (RefSeq), at 2,543,481 to 2,544,404 _2120 Shewana3_2121: Shewana3_2121 - aromatic amino acid aminotransferase (RefSeq), at 2,544,569 to 2,545,762 _2121 Shewana3_R0089: Shewana3_R0089 - tRNA-Leu (RefSeq), at 2,546,056 to 2,546,142 _R0089 Shewana3_R0090: Shewana3_R0090 - tRNA-Cys (RefSeq), at 2,546,192 to 2,546,265 _R0090 Shewana3_R0091: Shewana3_R0091 - tRNA-Gly (RefSeq), at 2,546,289 to 2,546,364 _R0091 Shewana3_2122: Shewana3_2122 - glyceraldehyde-3-phosphate dehydrogenase (RefSeq), at 2,546,690 to 2,548,123 _2122 Position (kb) 2544 2545 2546Strain fitness (log2 ratio) -2 -1 0 1at 2543.640 kb on + strand, within Shewana3_2120at 2543.645 kb on + strand, within Shewana3_2120at 2543.803 kb on + strand, within Shewana3_2120at 2544.258 kb on - strand, within Shewana3_2120at 2544.333 kb on + strandat 2545.073 kb on + strand, within Shewana3_2121at 2545.081 kb on - strand, within Shewana3_2121at 2545.137 kb on + strand, within Shewana3_2121at 2545.403 kb on - strand, within Shewana3_2121at 2545.606 kb on - strand, within Shewana3_2121at 2545.649 kb on - strandat 2545.695 kb on + strandat 2545.814 kb on - strandat 2545.826 kb on + strandat 2546.002 kb on - strandat 2546.042 kb on - strandat 2546.614 kb on + strandat 2546.624 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM
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2,543,640 + Shewana3_2120 0.17 -0.8
2,543,645 + Shewana3_2120 0.18 +0.4
2,543,803 + Shewana3_2120 0.35 +0.7
2,544,258 - Shewana3_2120 0.84 -0.4
2,544,333 + +0.7
2,545,073 + Shewana3_2121 0.42 -1.5
2,545,081 - Shewana3_2121 0.43 -0.5
2,545,137 + Shewana3_2121 0.48 -1.0
2,545,403 - Shewana3_2121 0.70 -2.2
2,545,606 - Shewana3_2121 0.87 -1.4
2,545,649 - -0.1
2,545,695 + -0.6
2,545,814 - -0.8
2,545,826 + -1.5
2,546,002 - -1.8
2,546,042 - +0.6
2,546,614 + +0.6
2,546,624 + -0.7

Or see this region's nucleotide sequence