Experiment: Carbon source Sucrose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1785 and Shewana3_1786 are separated by 62 nucleotides Shewana3_1786 and Shewana3_1787 are separated by 212 nucleotides
Shewana3_1785: Shewana3_1785 - glutamate dehydrogenase (NAD) (RefSeq), at 2,105,333 to 2,110,177
_1785
Shewana3_1786: Shewana3_1786 - dihydroorotate dehydrogenase 2 (RefSeq), at 2,110,240 to 2,111,259
_1786
Shewana3_1787: Shewana3_1787 - hypothetical protein (RefSeq), at 2,111,472 to 2,112,005
_1787
Position (kb)
2110
2111
2112 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2
3 at 2109.278 kb on + strand, within Shewana3_1785 at 2109.766 kb on + strand at 2109.773 kb on + strand at 2109.855 kb on + strand at 2109.865 kb on + strand at 2109.917 kb on + strand at 2109.917 kb on + strand at 2110.117 kb on + strand at 2110.457 kb on + strand, within Shewana3_1786 at 2110.502 kb on + strand, within Shewana3_1786 at 2110.651 kb on - strand at 2110.841 kb on + strand, within Shewana3_1786 at 2111.004 kb on - strand, within Shewana3_1786 at 2111.005 kb on - strand, within Shewana3_1786 at 2111.032 kb on + strand, within Shewana3_1786 at 2111.032 kb on + strand, within Shewana3_1786 at 2111.034 kb on + strand, within Shewana3_1786 at 2111.034 kb on + strand, within Shewana3_1786 at 2111.040 kb on - strand, within Shewana3_1786 at 2111.042 kb on - strand, within Shewana3_1786 at 2111.046 kb on + strand, within Shewana3_1786 at 2111.046 kb on + strand, within Shewana3_1786 at 2111.046 kb on + strand, within Shewana3_1786 at 2111.046 kb on + strand, within Shewana3_1786 at 2111.046 kb on + strand, within Shewana3_1786 at 2111.054 kb on - strand at 2111.054 kb on - strand, within Shewana3_1786 at 2111.190 kb on - strand at 2111.190 kb on - strand at 2111.364 kb on - strand at 2111.670 kb on + strand, within Shewana3_1787 at 2111.671 kb on + strand, within Shewana3_1787 at 2111.671 kb on + strand, within Shewana3_1787 at 2111.671 kb on + strand, within Shewana3_1787 at 2111.671 kb on + strand, within Shewana3_1787 at 2111.671 kb on + strand, within Shewana3_1787 at 2111.671 kb on + strand, within Shewana3_1787 at 2111.678 kb on - strand, within Shewana3_1787 at 2111.678 kb on - strand, within Shewana3_1787 at 2111.679 kb on - strand, within Shewana3_1787 at 2111.679 kb on - strand, within Shewana3_1787 at 2111.679 kb on - strand, within Shewana3_1787 at 2111.679 kb on - strand, within Shewana3_1787 at 2111.679 kb on - strand, within Shewana3_1787 at 2111.689 kb on - strand, within Shewana3_1787 at 2111.828 kb on + strand, within Shewana3_1787 at 2111.838 kb on + strand, within Shewana3_1787 at 2111.843 kb on + strand, within Shewana3_1787 at 2111.843 kb on + strand, within Shewana3_1787 at 2111.843 kb on + strand, within Shewana3_1787 at 2111.843 kb on + strand, within Shewana3_1787 at 2111.851 kb on - strand, within Shewana3_1787 at 2111.851 kb on - strand, within Shewana3_1787 at 2111.941 kb on + strand, within Shewana3_1787 at 2111.941 kb on + strand, within Shewana3_1787 at 2111.942 kb on + strand, within Shewana3_1787 at 2111.942 kb on + strand, within Shewana3_1787 at 2111.942 kb on + strand, within Shewana3_1787 at 2111.949 kb on - strand, within Shewana3_1787 at 2111.962 kb on + strand at 2111.977 kb on + strand at 2111.977 kb on + strand at 2111.978 kb on - strand at 2111.979 kb on + strand at 2111.979 kb on - strand at 2111.979 kb on - strand at 2111.984 kb on + strand at 2111.985 kb on - strand at 2112.012 kb on + strand at 2112.021 kb on + strand at 2112.022 kb on + strand at 2112.024 kb on - strand at 2112.024 kb on - strand at 2112.024 kb on - strand at 2112.091 kb on + strand at 2112.099 kb on - strand at 2112.110 kb on + strand at 2112.154 kb on + strand at 2112.171 kb on + strand at 2112.237 kb on + strand at 2112.256 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM remove 2,109,278 + Shewana3_1785 0.81 +0.2 2,109,766 + +0.2 2,109,773 + -1.2 2,109,855 + -0.1 2,109,865 + +0.5 2,109,917 + +0.1 2,109,917 + +0.5 2,110,117 + -0.2 2,110,457 + Shewana3_1786 0.21 -2.3 2,110,502 + Shewana3_1786 0.26 -3.8 2,110,651 - -2.0 2,110,841 + Shewana3_1786 0.59 -2.5 2,111,004 - Shewana3_1786 0.75 -3.8 2,111,005 - Shewana3_1786 0.75 -3.5 2,111,032 + Shewana3_1786 0.78 -4.6 2,111,032 + Shewana3_1786 0.78 -1.0 2,111,034 + Shewana3_1786 0.78 -2.3 2,111,034 + Shewana3_1786 0.78 -3.9 2,111,040 - Shewana3_1786 0.78 -4.8 2,111,042 - Shewana3_1786 0.79 -2.2 2,111,046 + Shewana3_1786 0.79 -3.4 2,111,046 + Shewana3_1786 0.79 -3.1 2,111,046 + Shewana3_1786 0.79 -3.1 2,111,046 + Shewana3_1786 0.79 -3.6 2,111,046 + Shewana3_1786 0.79 -6.4 2,111,054 - -1.8 2,111,054 - Shewana3_1786 0.80 -3.8 2,111,190 - -3.6 2,111,190 - -4.0 2,111,364 - +0.3 2,111,670 + Shewana3_1787 0.37 -1.5 2,111,671 + Shewana3_1787 0.37 -2.6 2,111,671 + Shewana3_1787 0.37 -1.1 2,111,671 + Shewana3_1787 0.37 +1.4 2,111,671 + Shewana3_1787 0.37 +0.1 2,111,671 + Shewana3_1787 0.37 -0.1 2,111,671 + Shewana3_1787 0.37 +0.9 2,111,678 - Shewana3_1787 0.39 -0.2 2,111,678 - Shewana3_1787 0.39 +0.8 2,111,679 - Shewana3_1787 0.39 +0.7 2,111,679 - Shewana3_1787 0.39 -0.8 2,111,679 - Shewana3_1787 0.39 +0.8 2,111,679 - Shewana3_1787 0.39 -0.2 2,111,679 - Shewana3_1787 0.39 +0.0 2,111,689 - Shewana3_1787 0.41 -1.4 2,111,828 + Shewana3_1787 0.67 -0.6 2,111,838 + Shewana3_1787 0.69 +0.6 2,111,843 + Shewana3_1787 0.69 +0.4 2,111,843 + Shewana3_1787 0.69 +0.4 2,111,843 + Shewana3_1787 0.69 -0.6 2,111,843 + Shewana3_1787 0.69 +0.2 2,111,851 - Shewana3_1787 0.71 +1.2 2,111,851 - Shewana3_1787 0.71 +2.4 2,111,941 + Shewana3_1787 0.88 +0.8 2,111,941 + Shewana3_1787 0.88 -0.3 2,111,942 + Shewana3_1787 0.88 -0.5 2,111,942 + Shewana3_1787 0.88 -0.3 2,111,942 + Shewana3_1787 0.88 +0.2 2,111,949 - Shewana3_1787 0.89 +2.8 2,111,962 + -0.4 2,111,977 + -1.7 2,111,977 + -0.2 2,111,978 - -0.8 2,111,979 + -0.9 2,111,979 - +0.8 2,111,979 - -0.2 2,111,984 + +0.4 2,111,985 - +0.8 2,112,012 + -0.6 2,112,021 + +0.3 2,112,022 + +0.1 2,112,024 - +0.5 2,112,024 - -1.6 2,112,024 - +0.5 2,112,091 + +0.1 2,112,099 - +0.2 2,112,110 + +0.5 2,112,154 + +1.0 2,112,171 + +0.5 2,112,237 + -0.7 2,112,256 - +0.2
Or see this region's nucleotide sequence