Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34580

Experiment: R2A with Lomefloxacin 0.00075 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS34570 and RR42_RS34575 are separated by 401 nucleotidesRR42_RS34575 and RR42_RS34580 are separated by 29 nucleotidesRR42_RS34580 and RR42_RS34585 are separated by 142 nucleotides RR42_RS34570: RR42_RS34570 - hypothetical protein, at 3,198,224 to 3,198,415 _RS34570 RR42_RS34575: RR42_RS34575 - transposase, at 3,198,817 to 3,199,221 _RS34575 RR42_RS34580: RR42_RS34580 - hypothetical protein, at 3,199,251 to 3,200,060 _RS34580 RR42_RS34585: RR42_RS34585 - LysR family transcriptional regulator, at 3,200,203 to 3,201,114 _RS34585 Position (kb) 3199 3200 3201Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3198.273 kb on + strand, within RR42_RS34570at 3198.273 kb on + strand, within RR42_RS34570at 3198.506 kb on + strandat 3198.523 kb on - strandat 3198.541 kb on + strandat 3198.541 kb on + strandat 3198.542 kb on - strandat 3198.542 kb on - strandat 3198.542 kb on - strandat 3198.542 kb on - strandat 3198.542 kb on - strandat 3198.545 kb on + strandat 3198.545 kb on + strandat 3198.545 kb on + strandat 3198.546 kb on - strandat 3198.546 kb on - strandat 3198.546 kb on - strandat 3198.546 kb on - strandat 3198.546 kb on - strandat 3198.546 kb on - strandat 3198.546 kb on - strandat 3198.577 kb on - strandat 3198.577 kb on - strandat 3198.577 kb on - strandat 3198.581 kb on + strandat 3198.582 kb on - strandat 3198.582 kb on - strandat 3198.584 kb on + strandat 3198.679 kb on + strandat 3198.725 kb on + strandat 3198.725 kb on + strandat 3198.779 kb on - strandat 3198.779 kb on - strandat 3198.779 kb on - strandat 3200.091 kb on + strandat 3200.153 kb on + strandat 3200.153 kb on + strandat 3200.154 kb on - strandat 3200.154 kb on - strandat 3200.155 kb on + strandat 3200.155 kb on + strandat 3200.155 kb on + strandat 3200.155 kb on + strandat 3200.155 kb on + strandat 3200.155 kb on + strandat 3200.155 kb on + strandat 3200.156 kb on - strandat 3200.156 kb on - strandat 3200.156 kb on - strandat 3200.156 kb on - strandat 3200.157 kb on + strandat 3200.157 kb on + strandat 3200.157 kb on + strandat 3200.157 kb on + strandat 3200.157 kb on + strandat 3200.158 kb on - strandat 3200.158 kb on - strandat 3200.292 kb on - strandat 3200.395 kb on + strand, within RR42_RS34585at 3200.396 kb on - strand, within RR42_RS34585

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.00075 mM
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3,198,273 + RR42_RS34570 0.26 +0.6
3,198,273 + RR42_RS34570 0.26 +0.6
3,198,506 + +1.3
3,198,523 - -0.2
3,198,541 + +0.1
3,198,541 + +0.9
3,198,542 - +0.5
3,198,542 - -1.8
3,198,542 - +0.3
3,198,542 - -0.7
3,198,542 - -0.1
3,198,545 + +0.3
3,198,545 + +0.8
3,198,545 + +0.4
3,198,546 - +1.8
3,198,546 - -0.7
3,198,546 - -0.5
3,198,546 - -0.6
3,198,546 - -0.1
3,198,546 - +0.3
3,198,546 - -1.7
3,198,577 - -0.3
3,198,577 - -0.5
3,198,577 - +1.5
3,198,581 + +1.2
3,198,582 - -0.5
3,198,582 - -0.4
3,198,584 + -0.5
3,198,679 + -0.3
3,198,725 + +0.3
3,198,725 + -0.7
3,198,779 - -0.3
3,198,779 - -1.3
3,198,779 - +0.2
3,200,091 + -0.2
3,200,153 + +0.0
3,200,153 + -0.4
3,200,154 - +1.0
3,200,154 - -0.3
3,200,155 + -0.9
3,200,155 + +0.4
3,200,155 + +2.7
3,200,155 + -1.2
3,200,155 + +0.1
3,200,155 + +0.4
3,200,155 + -0.7
3,200,156 - +3.8
3,200,156 - -0.4
3,200,156 - -0.0
3,200,156 - -0.5
3,200,157 + +1.6
3,200,157 + -0.4
3,200,157 + -1.3
3,200,157 + +0.4
3,200,157 + +1.4
3,200,158 - +0.3
3,200,158 - -0.1
3,200,292 - -0.1
3,200,395 + RR42_RS34585 0.21 -1.0
3,200,396 - RR42_RS34585 0.21 -1.1

Or see this region's nucleotide sequence