Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34210

Experiment: R2A with Lomefloxacin 0.00075 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS34200 and RR42_RS34205 are separated by 324 nucleotidesRR42_RS34205 and RR42_RS34210 are separated by 220 nucleotidesRR42_RS34210 and RR42_RS34215 are separated by 257 nucleotidesRR42_RS34215 and RR42_RS34220 are separated by 278 nucleotides RR42_RS34200: RR42_RS34200 - membrane protein, at 3,098,429 to 3,099,205 _RS34200 RR42_RS34205: RR42_RS34205 - hypothetical protein, at 3,099,530 to 3,099,880 _RS34205 RR42_RS34210: RR42_RS34210 - hypothetical protein, at 3,100,101 to 3,100,490 _RS34210 RR42_RS34215: RR42_RS34215 - ferredoxin, at 3,100,748 to 3,101,068 _RS34215 RR42_RS34220: RR42_RS34220 - pyruvate dehydrogenase, at 3,101,347 to 3,104,022 _RS34220 Position (kb) 3100 3101Strain fitness (log2 ratio) -1 0 1at 3099.120 kb on - strand, within RR42_RS34200at 3099.327 kb on - strandat 3099.434 kb on - strandat 3099.434 kb on - strandat 3099.476 kb on - strandat 3099.535 kb on + strandat 3099.588 kb on - strand, within RR42_RS34205at 3099.792 kb on - strand, within RR42_RS34205at 3099.806 kb on + strand, within RR42_RS34205at 3099.807 kb on - strand, within RR42_RS34205at 3099.807 kb on - strand, within RR42_RS34205at 3099.939 kb on + strandat 3100.270 kb on + strand, within RR42_RS34210at 3100.271 kb on - strand, within RR42_RS34210at 3100.271 kb on - strand, within RR42_RS34210at 3100.496 kb on + strandat 3100.537 kb on - strandat 3100.582 kb on + strandat 3100.614 kb on - strandat 3100.730 kb on - strandat 3100.731 kb on + strandat 3100.731 kb on + strandat 3100.731 kb on + strandat 3100.893 kb on + strand, within RR42_RS34215at 3101.308 kb on + strandat 3101.309 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.00075 mM
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3,099,120 - RR42_RS34200 0.89 -0.7
3,099,327 - -0.1
3,099,434 - +0.6
3,099,434 - -0.4
3,099,476 - -0.1
3,099,535 + -0.4
3,099,588 - RR42_RS34205 0.17 +1.1
3,099,792 - RR42_RS34205 0.75 -0.4
3,099,806 + RR42_RS34205 0.79 -0.3
3,099,807 - RR42_RS34205 0.79 -0.1
3,099,807 - RR42_RS34205 0.79 -0.5
3,099,939 + -0.1
3,100,270 + RR42_RS34210 0.43 +0.0
3,100,271 - RR42_RS34210 0.44 +0.5
3,100,271 - RR42_RS34210 0.44 +1.3
3,100,496 + +0.9
3,100,537 - -0.3
3,100,582 + -0.9
3,100,614 - +1.3
3,100,730 - +1.1
3,100,731 + +1.2
3,100,731 + -1.7
3,100,731 + +0.6
3,100,893 + RR42_RS34215 0.45 +1.3
3,101,308 + +1.0
3,101,309 - -0.0

Or see this region's nucleotide sequence