Experiment: R2A with Lomefloxacin 0.00075 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS32410 and RR42_RS32415 are separated by 912 nucleotides RR42_RS32415 and RR42_RS32420 are separated by 15 nucleotides
RR42_RS32410: RR42_RS32410 - RNA polymerase subunit sigma-24, at 2,665,543 to 2,666,091
_RS32410
RR42_RS32415: RR42_RS32415 - hemolysin D, at 2,667,004 to 2,668,236
_RS32415
RR42_RS32420: RR42_RS32420 - multidrug efflux RND transporter permease subunit, at 2,668,252 to 2,671,467
_RS32420
Position (kb)
2667
2668
2669 Strain fitness (log2 ratio)
-2
-1
0
1 at 2666.042 kb on + strand at 2666.528 kb on + strand at 2666.528 kb on + strand at 2666.529 kb on - strand at 2667.033 kb on + strand at 2667.033 kb on + strand at 2667.034 kb on - strand at 2667.057 kb on - strand at 2667.057 kb on - strand at 2667.295 kb on + strand, within RR42_RS32415 at 2667.379 kb on + strand, within RR42_RS32415 at 2667.421 kb on + strand, within RR42_RS32415 at 2667.422 kb on - strand, within RR42_RS32415 at 2667.422 kb on - strand, within RR42_RS32415 at 2667.422 kb on - strand, within RR42_RS32415 at 2667.422 kb on - strand, within RR42_RS32415 at 2667.574 kb on + strand, within RR42_RS32415 at 2667.575 kb on - strand, within RR42_RS32415 at 2667.631 kb on + strand, within RR42_RS32415 at 2667.632 kb on - strand, within RR42_RS32415 at 2668.025 kb on - strand, within RR42_RS32415 at 2668.480 kb on + strand at 2668.480 kb on + strand at 2668.720 kb on + strand, within RR42_RS32420 at 2668.721 kb on - strand, within RR42_RS32420 at 2668.721 kb on - strand, within RR42_RS32420 at 2668.795 kb on + strand, within RR42_RS32420 at 2668.796 kb on - strand, within RR42_RS32420 at 2668.796 kb on - strand, within RR42_RS32420 at 2668.837 kb on + strand, within RR42_RS32420 at 2669.013 kb on + strand, within RR42_RS32420 at 2669.074 kb on + strand, within RR42_RS32420 at 2669.075 kb on - strand, within RR42_RS32420 at 2669.075 kb on - strand, within RR42_RS32420 at 2669.076 kb on + strand, within RR42_RS32420 at 2669.092 kb on + strand, within RR42_RS32420 at 2669.092 kb on + strand, within RR42_RS32420 at 2669.092 kb on + strand, within RR42_RS32420 at 2669.093 kb on - strand, within RR42_RS32420 at 2669.093 kb on - strand, within RR42_RS32420 at 2669.093 kb on - strand, within RR42_RS32420 at 2669.198 kb on - strand, within RR42_RS32420 at 2669.231 kb on - strand, within RR42_RS32420
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.00075 mM remove 2,666,042 + -1.6 2,666,528 + +0.1 2,666,528 + -0.0 2,666,529 - +1.2 2,667,033 + -0.6 2,667,033 + +1.1 2,667,034 - -1.8 2,667,057 - -0.4 2,667,057 - +1.2 2,667,295 + RR42_RS32415 0.24 -0.9 2,667,379 + RR42_RS32415 0.30 -0.6 2,667,421 + RR42_RS32415 0.34 +0.4 2,667,422 - RR42_RS32415 0.34 -0.6 2,667,422 - RR42_RS32415 0.34 +0.0 2,667,422 - RR42_RS32415 0.34 -1.5 2,667,422 - RR42_RS32415 0.34 +0.1 2,667,574 + RR42_RS32415 0.46 +1.6 2,667,575 - RR42_RS32415 0.46 +0.3 2,667,631 + RR42_RS32415 0.51 +0.2 2,667,632 - RR42_RS32415 0.51 +0.8 2,668,025 - RR42_RS32415 0.83 +0.6 2,668,480 + -0.7 2,668,480 + +0.4 2,668,720 + RR42_RS32420 0.15 +1.1 2,668,721 - RR42_RS32420 0.15 +0.5 2,668,721 - RR42_RS32420 0.15 -1.8 2,668,795 + RR42_RS32420 0.17 +0.3 2,668,796 - RR42_RS32420 0.17 +0.1 2,668,796 - RR42_RS32420 0.17 -1.2 2,668,837 + RR42_RS32420 0.18 -1.6 2,669,013 + RR42_RS32420 0.24 -0.2 2,669,074 + RR42_RS32420 0.26 -0.7 2,669,075 - RR42_RS32420 0.26 -1.1 2,669,075 - RR42_RS32420 0.26 +1.4 2,669,076 + RR42_RS32420 0.26 +0.0 2,669,092 + RR42_RS32420 0.26 +1.2 2,669,092 + RR42_RS32420 0.26 -0.8 2,669,092 + RR42_RS32420 0.26 +0.2 2,669,093 - RR42_RS32420 0.26 -0.2 2,669,093 - RR42_RS32420 0.26 +0.1 2,669,093 - RR42_RS32420 0.26 -0.4 2,669,198 - RR42_RS32420 0.29 +0.1 2,669,231 - RR42_RS32420 0.30 -0.0
Or see this region's nucleotide sequence