Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32415

Experiment: R2A with Lomefloxacin 0.00075 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS32410 and RR42_RS32415 are separated by 912 nucleotidesRR42_RS32415 and RR42_RS32420 are separated by 15 nucleotides RR42_RS32410: RR42_RS32410 - RNA polymerase subunit sigma-24, at 2,665,543 to 2,666,091 _RS32410 RR42_RS32415: RR42_RS32415 - hemolysin D, at 2,667,004 to 2,668,236 _RS32415 RR42_RS32420: RR42_RS32420 - multidrug efflux RND transporter permease subunit, at 2,668,252 to 2,671,467 _RS32420 Position (kb) 2667 2668 2669Strain fitness (log2 ratio) -2 -1 0 1at 2666.042 kb on + strandat 2666.528 kb on + strandat 2666.528 kb on + strandat 2666.529 kb on - strandat 2667.033 kb on + strandat 2667.033 kb on + strandat 2667.034 kb on - strandat 2667.057 kb on - strandat 2667.057 kb on - strandat 2667.295 kb on + strand, within RR42_RS32415at 2667.379 kb on + strand, within RR42_RS32415at 2667.421 kb on + strand, within RR42_RS32415at 2667.422 kb on - strand, within RR42_RS32415at 2667.422 kb on - strand, within RR42_RS32415at 2667.422 kb on - strand, within RR42_RS32415at 2667.422 kb on - strand, within RR42_RS32415at 2667.574 kb on + strand, within RR42_RS32415at 2667.575 kb on - strand, within RR42_RS32415at 2667.631 kb on + strand, within RR42_RS32415at 2667.632 kb on - strand, within RR42_RS32415at 2668.025 kb on - strand, within RR42_RS32415at 2668.480 kb on + strandat 2668.480 kb on + strandat 2668.720 kb on + strand, within RR42_RS32420at 2668.721 kb on - strand, within RR42_RS32420at 2668.721 kb on - strand, within RR42_RS32420at 2668.795 kb on + strand, within RR42_RS32420at 2668.796 kb on - strand, within RR42_RS32420at 2668.796 kb on - strand, within RR42_RS32420at 2668.837 kb on + strand, within RR42_RS32420at 2669.013 kb on + strand, within RR42_RS32420at 2669.074 kb on + strand, within RR42_RS32420at 2669.075 kb on - strand, within RR42_RS32420at 2669.075 kb on - strand, within RR42_RS32420at 2669.076 kb on + strand, within RR42_RS32420at 2669.092 kb on + strand, within RR42_RS32420at 2669.092 kb on + strand, within RR42_RS32420at 2669.092 kb on + strand, within RR42_RS32420at 2669.093 kb on - strand, within RR42_RS32420at 2669.093 kb on - strand, within RR42_RS32420at 2669.093 kb on - strand, within RR42_RS32420at 2669.198 kb on - strand, within RR42_RS32420at 2669.231 kb on - strand, within RR42_RS32420

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.00075 mM
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2,666,042 + -1.6
2,666,528 + +0.1
2,666,528 + -0.0
2,666,529 - +1.2
2,667,033 + -0.6
2,667,033 + +1.1
2,667,034 - -1.8
2,667,057 - -0.4
2,667,057 - +1.2
2,667,295 + RR42_RS32415 0.24 -0.9
2,667,379 + RR42_RS32415 0.30 -0.6
2,667,421 + RR42_RS32415 0.34 +0.4
2,667,422 - RR42_RS32415 0.34 -0.6
2,667,422 - RR42_RS32415 0.34 +0.0
2,667,422 - RR42_RS32415 0.34 -1.5
2,667,422 - RR42_RS32415 0.34 +0.1
2,667,574 + RR42_RS32415 0.46 +1.6
2,667,575 - RR42_RS32415 0.46 +0.3
2,667,631 + RR42_RS32415 0.51 +0.2
2,667,632 - RR42_RS32415 0.51 +0.8
2,668,025 - RR42_RS32415 0.83 +0.6
2,668,480 + -0.7
2,668,480 + +0.4
2,668,720 + RR42_RS32420 0.15 +1.1
2,668,721 - RR42_RS32420 0.15 +0.5
2,668,721 - RR42_RS32420 0.15 -1.8
2,668,795 + RR42_RS32420 0.17 +0.3
2,668,796 - RR42_RS32420 0.17 +0.1
2,668,796 - RR42_RS32420 0.17 -1.2
2,668,837 + RR42_RS32420 0.18 -1.6
2,669,013 + RR42_RS32420 0.24 -0.2
2,669,074 + RR42_RS32420 0.26 -0.7
2,669,075 - RR42_RS32420 0.26 -1.1
2,669,075 - RR42_RS32420 0.26 +1.4
2,669,076 + RR42_RS32420 0.26 +0.0
2,669,092 + RR42_RS32420 0.26 +1.2
2,669,092 + RR42_RS32420 0.26 -0.8
2,669,092 + RR42_RS32420 0.26 +0.2
2,669,093 - RR42_RS32420 0.26 -0.2
2,669,093 - RR42_RS32420 0.26 +0.1
2,669,093 - RR42_RS32420 0.26 -0.4
2,669,198 - RR42_RS32420 0.29 +0.1
2,669,231 - RR42_RS32420 0.30 -0.0

Or see this region's nucleotide sequence