Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29545

Experiment: R2A with Lomefloxacin 0.00075 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS29545 and RR42_RS29550 are separated by 24 nucleotides RR42_RS29545: RR42_RS29545 - mannosyltransferase, at 1,984,608 to 1,985,405 _RS29545 RR42_RS29550: RR42_RS29550 - ABC transporter permease, at 1,985,430 to 1,986,281 _RS29550 Position (kb) 1984 1985 1986Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1983.625 kb on + strandat 1983.625 kb on + strandat 1983.684 kb on - strandat 1983.781 kb on + strandat 1983.781 kb on + strandat 1983.782 kb on - strandat 1983.920 kb on - strandat 1983.920 kb on - strandat 1983.920 kb on - strandat 1983.920 kb on - strandat 1984.097 kb on + strandat 1984.097 kb on + strandat 1984.213 kb on + strandat 1984.213 kb on + strandat 1984.213 kb on + strandat 1984.213 kb on + strandat 1984.213 kb on + strandat 1984.215 kb on + strandat 1984.504 kb on - strandat 1984.507 kb on + strandat 1984.668 kb on + strandat 1984.669 kb on - strandat 1984.912 kb on + strand, within RR42_RS29545at 1984.912 kb on + strand, within RR42_RS29545at 1984.955 kb on + strand, within RR42_RS29545at 1984.956 kb on - strand, within RR42_RS29545at 1985.423 kb on + strandat 1985.423 kb on + strandat 1985.424 kb on - strandat 1985.424 kb on - strandat 1985.424 kb on - strandat 1985.424 kb on - strandat 1985.501 kb on - strandat 1985.501 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.00075 mM
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1,983,625 + +1.8
1,983,625 + -1.0
1,983,684 - -0.1
1,983,781 + +0.4
1,983,781 + -0.2
1,983,782 - +2.2
1,983,920 - +1.2
1,983,920 - +0.3
1,983,920 - +0.6
1,983,920 - -0.2
1,984,097 + +0.0
1,984,097 + +0.2
1,984,213 + +0.3
1,984,213 + -0.2
1,984,213 + +0.4
1,984,213 + +0.4
1,984,213 + -3.2
1,984,215 + -0.6
1,984,504 - -0.6
1,984,507 + -0.7
1,984,668 + -0.2
1,984,669 - +0.6
1,984,912 + RR42_RS29545 0.38 +0.3
1,984,912 + RR42_RS29545 0.38 -0.1
1,984,955 + RR42_RS29545 0.43 +0.6
1,984,956 - RR42_RS29545 0.44 +0.2
1,985,423 + -0.2
1,985,423 + +1.0
1,985,424 - +0.7
1,985,424 - -0.5
1,985,424 - +0.2
1,985,424 - +0.5
1,985,501 - +1.0
1,985,501 - -0.4

Or see this region's nucleotide sequence