Experiment: R2A with Lomefloxacin 0.00075 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22925 and RR42_RS22930 overlap by 1 nucleotides RR42_RS22930 and RR42_RS22935 are separated by 53 nucleotides
RR42_RS22925: RR42_RS22925 - RND transporter, at 475,120 to 476,193
_RS22925
RR42_RS22930: RR42_RS22930 - cytochrome C peroxidase, at 476,193 to 479,342
_RS22930
RR42_RS22935: RR42_RS22935 - metal transporter, at 479,396 to 480,613
_RS22935
Position (kb) 476
477
478
479
480 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 475.199 kb on + strand at 475.200 kb on - strand at 475.302 kb on - strand, within RR42_RS22925 at 475.302 kb on - strand, within RR42_RS22925 at 475.318 kb on + strand, within RR42_RS22925 at 475.336 kb on + strand, within RR42_RS22925 at 475.337 kb on - strand, within RR42_RS22925 at 475.337 kb on - strand, within RR42_RS22925 at 476.014 kb on + strand, within RR42_RS22925 at 476.284 kb on - strand at 476.454 kb on + strand at 476.503 kb on - strand at 476.503 kb on - strand at 476.503 kb on - strand at 476.707 kb on + strand, within RR42_RS22930 at 476.708 kb on - strand, within RR42_RS22930 at 476.745 kb on + strand, within RR42_RS22930 at 476.789 kb on + strand, within RR42_RS22930 at 477.168 kb on + strand, within RR42_RS22930 at 477.169 kb on - strand, within RR42_RS22930 at 477.256 kb on - strand, within RR42_RS22930 at 477.342 kb on + strand, within RR42_RS22930 at 477.343 kb on - strand, within RR42_RS22930 at 477.343 kb on - strand, within RR42_RS22930 at 477.723 kb on + strand, within RR42_RS22930 at 477.837 kb on + strand, within RR42_RS22930 at 477.837 kb on + strand, within RR42_RS22930 at 477.837 kb on + strand, within RR42_RS22930 at 477.866 kb on + strand, within RR42_RS22930 at 477.866 kb on + strand, within RR42_RS22930 at 478.155 kb on + strand, within RR42_RS22930 at 478.156 kb on - strand, within RR42_RS22930 at 478.156 kb on - strand, within RR42_RS22930 at 478.156 kb on - strand, within RR42_RS22930 at 478.500 kb on - strand, within RR42_RS22930 at 478.886 kb on + strand, within RR42_RS22930 at 478.886 kb on + strand, within RR42_RS22930 at 478.887 kb on - strand, within RR42_RS22930 at 478.938 kb on + strand, within RR42_RS22930 at 479.024 kb on + strand, within RR42_RS22930 at 479.025 kb on - strand, within RR42_RS22930 at 479.866 kb on - strand, within RR42_RS22935 at 480.080 kb on + strand, within RR42_RS22935 at 480.080 kb on + strand, within RR42_RS22935 at 480.081 kb on - strand, within RR42_RS22935
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.00075 mM remove 475,199 + -2.4 475,200 - -1.8 475,302 - RR42_RS22925 0.17 +0.3 475,302 - RR42_RS22925 0.17 -0.0 475,318 + RR42_RS22925 0.18 -1.3 475,336 + RR42_RS22925 0.20 +0.3 475,337 - RR42_RS22925 0.20 +3.9 475,337 - RR42_RS22925 0.20 -1.5 476,014 + RR42_RS22925 0.83 -1.1 476,284 - -0.8 476,454 + +0.5 476,503 - -0.1 476,503 - +0.1 476,503 - -0.2 476,707 + RR42_RS22930 0.16 +0.0 476,708 - RR42_RS22930 0.16 +0.3 476,745 + RR42_RS22930 0.18 -0.9 476,789 + RR42_RS22930 0.19 -0.7 477,168 + RR42_RS22930 0.31 +0.3 477,169 - RR42_RS22930 0.31 -0.2 477,256 - RR42_RS22930 0.34 -0.0 477,342 + RR42_RS22930 0.36 -1.6 477,343 - RR42_RS22930 0.37 +0.2 477,343 - RR42_RS22930 0.37 -1.3 477,723 + RR42_RS22930 0.49 -1.5 477,837 + RR42_RS22930 0.52 -1.7 477,837 + RR42_RS22930 0.52 -0.2 477,837 + RR42_RS22930 0.52 -1.5 477,866 + RR42_RS22930 0.53 -0.9 477,866 + RR42_RS22930 0.53 +0.4 478,155 + RR42_RS22930 0.62 -1.0 478,156 - RR42_RS22930 0.62 +0.8 478,156 - RR42_RS22930 0.62 -0.2 478,156 - RR42_RS22930 0.62 -0.1 478,500 - RR42_RS22930 0.73 -0.1 478,886 + RR42_RS22930 0.85 +0.8 478,886 + RR42_RS22930 0.85 -1.8 478,887 - RR42_RS22930 0.86 +0.2 478,938 + RR42_RS22930 0.87 -0.6 479,024 + RR42_RS22930 0.90 -0.4 479,025 - RR42_RS22930 0.90 -1.1 479,866 - RR42_RS22935 0.39 -0.2 480,080 + RR42_RS22935 0.56 -0.9 480,080 + RR42_RS22935 0.56 -1.6 480,081 - RR42_RS22935 0.56 -0.2
Or see this region's nucleotide sequence