Experiment: R2A with Lomefloxacin 0.00075 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22445 and RR42_RS22450 overlap by 4 nucleotides RR42_RS22450 and RR42_RS22455 are separated by 0 nucleotides
RR42_RS22445: RR42_RS22445 - phosphoenolpyruvate phosphomutase, at 371,078 to 372,784
_RS22445
RR42_RS22450: RR42_RS22450 - phosphonopyruvate decarboxylase, at 372,781 to 373,962
_RS22450
RR42_RS22455: RR42_RS22455 - 2-aminoethylphosphonate aminotransferase, at 373,963 to 375,027
_RS22455
Position (kb) 372
373
374 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 371.946 kb on - strand, within RR42_RS22445 at 371.946 kb on - strand, within RR42_RS22445 at 371.966 kb on + strand, within RR42_RS22445 at 371.966 kb on + strand, within RR42_RS22445 at 371.966 kb on + strand, within RR42_RS22445 at 372.302 kb on + strand, within RR42_RS22445 at 372.302 kb on + strand, within RR42_RS22445 at 372.303 kb on - strand, within RR42_RS22445 at 372.303 kb on - strand, within RR42_RS22445 at 372.303 kb on - strand, within RR42_RS22445 at 372.303 kb on - strand, within RR42_RS22445 at 372.303 kb on - strand, within RR42_RS22445 at 372.303 kb on - strand, within RR42_RS22445 at 372.303 kb on - strand, within RR42_RS22445 at 372.303 kb on - strand, within RR42_RS22445 at 372.303 kb on - strand, within RR42_RS22445 at 372.303 kb on - strand, within RR42_RS22445 at 372.304 kb on + strand, within RR42_RS22445 at 372.304 kb on + strand, within RR42_RS22445 at 372.305 kb on - strand, within RR42_RS22445 at 372.345 kb on + strand, within RR42_RS22445 at 372.401 kb on + strand, within RR42_RS22445 at 372.665 kb on + strand at 372.666 kb on - strand at 372.666 kb on - strand at 372.666 kb on - strand at 372.733 kb on + strand at 372.877 kb on + strand at 372.878 kb on - strand at 372.878 kb on - strand at 372.904 kb on + strand, within RR42_RS22450 at 372.904 kb on + strand, within RR42_RS22450 at 372.905 kb on - strand, within RR42_RS22450 at 372.905 kb on - strand, within RR42_RS22450 at 373.233 kb on + strand, within RR42_RS22450 at 373.233 kb on + strand, within RR42_RS22450 at 373.234 kb on - strand, within RR42_RS22450 at 373.234 kb on - strand, within RR42_RS22450 at 373.256 kb on - strand, within RR42_RS22450 at 373.416 kb on + strand, within RR42_RS22450 at 373.504 kb on + strand, within RR42_RS22450 at 373.504 kb on + strand, within RR42_RS22450 at 373.505 kb on - strand, within RR42_RS22450 at 373.505 kb on - strand, within RR42_RS22450 at 373.642 kb on + strand, within RR42_RS22450 at 373.642 kb on + strand, within RR42_RS22450 at 373.960 kb on + strand at 373.960 kb on + strand at 373.961 kb on - strand at 373.961 kb on - strand at 373.961 kb on - strand at 373.961 kb on - strand at 373.970 kb on + strand at 373.970 kb on + strand at 373.971 kb on - strand at 374.098 kb on + strand, within RR42_RS22455 at 374.098 kb on + strand, within RR42_RS22455 at 374.098 kb on + strand, within RR42_RS22455 at 374.098 kb on + strand, within RR42_RS22455 at 374.098 kb on + strand, within RR42_RS22455 at 374.099 kb on - strand, within RR42_RS22455 at 374.099 kb on - strand, within RR42_RS22455 at 374.099 kb on - strand at 374.099 kb on - strand, within RR42_RS22455 at 374.257 kb on + strand, within RR42_RS22455 at 374.438 kb on + strand, within RR42_RS22455 at 374.438 kb on + strand, within RR42_RS22455 at 374.438 kb on + strand, within RR42_RS22455 at 374.439 kb on - strand, within RR42_RS22455 at 374.439 kb on - strand, within RR42_RS22455 at 374.439 kb on - strand, within RR42_RS22455 at 374.605 kb on + strand, within RR42_RS22455 at 374.605 kb on + strand, within RR42_RS22455 at 374.606 kb on - strand, within RR42_RS22455 at 374.608 kb on + strand, within RR42_RS22455 at 374.608 kb on + strand, within RR42_RS22455 at 374.652 kb on + strand, within RR42_RS22455 at 374.652 kb on + strand, within RR42_RS22455 at 374.661 kb on + strand, within RR42_RS22455 at 374.672 kb on + strand, within RR42_RS22455 at 374.672 kb on + strand, within RR42_RS22455 at 374.672 kb on + strand, within RR42_RS22455 at 374.672 kb on + strand, within RR42_RS22455 at 374.672 kb on + strand, within RR42_RS22455 at 374.672 kb on + strand, within RR42_RS22455 at 374.673 kb on - strand, within RR42_RS22455 at 374.680 kb on + strand, within RR42_RS22455 at 374.680 kb on + strand, within RR42_RS22455 at 374.681 kb on - strand, within RR42_RS22455 at 374.681 kb on - strand, within RR42_RS22455 at 374.681 kb on - strand, within RR42_RS22455 at 374.683 kb on + strand, within RR42_RS22455 at 374.870 kb on - strand, within RR42_RS22455 at 374.914 kb on + strand, within RR42_RS22455 at 374.915 kb on - strand, within RR42_RS22455 at 374.915 kb on - strand, within RR42_RS22455 at 374.915 kb on - strand, within RR42_RS22455 at 374.915 kb on - strand, within RR42_RS22455 at 374.933 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.00075 mM remove 371,946 - RR42_RS22445 0.51 -1.7 371,946 - RR42_RS22445 0.51 -1.0 371,966 + RR42_RS22445 0.52 -1.2 371,966 + RR42_RS22445 0.52 -1.5 371,966 + RR42_RS22445 0.52 -0.0 372,302 + RR42_RS22445 0.72 -3.2 372,302 + RR42_RS22445 0.72 -4.5 372,303 - RR42_RS22445 0.72 -0.5 372,303 - RR42_RS22445 0.72 +0.4 372,303 - RR42_RS22445 0.72 +1.0 372,303 - RR42_RS22445 0.72 -1.2 372,303 - RR42_RS22445 0.72 -1.4 372,303 - RR42_RS22445 0.72 -2.7 372,303 - RR42_RS22445 0.72 -1.1 372,303 - RR42_RS22445 0.72 -0.9 372,303 - RR42_RS22445 0.72 -1.6 372,303 - RR42_RS22445 0.72 -1.0 372,304 + RR42_RS22445 0.72 -1.9 372,304 + RR42_RS22445 0.72 -3.1 372,305 - RR42_RS22445 0.72 -0.8 372,345 + RR42_RS22445 0.74 -1.8 372,401 + RR42_RS22445 0.78 -0.6 372,665 + +0.5 372,666 - -0.9 372,666 - -2.1 372,666 - +0.2 372,733 + -0.7 372,877 + -1.8 372,878 - -1.5 372,878 - -0.2 372,904 + RR42_RS22450 0.10 -1.5 372,904 + RR42_RS22450 0.10 -1.7 372,905 - RR42_RS22450 0.10 -0.6 372,905 - RR42_RS22450 0.10 -0.3 373,233 + RR42_RS22450 0.38 -0.9 373,233 + RR42_RS22450 0.38 -0.9 373,234 - RR42_RS22450 0.38 -0.6 373,234 - RR42_RS22450 0.38 -3.2 373,256 - RR42_RS22450 0.40 -1.9 373,416 + RR42_RS22450 0.54 -0.1 373,504 + RR42_RS22450 0.61 -0.9 373,504 + RR42_RS22450 0.61 -0.2 373,505 - RR42_RS22450 0.61 -1.6 373,505 - RR42_RS22450 0.61 -2.0 373,642 + RR42_RS22450 0.73 -1.4 373,642 + RR42_RS22450 0.73 -2.1 373,960 + -0.4 373,960 + -0.0 373,961 - -3.3 373,961 - -0.8 373,961 - -2.2 373,961 - -1.5 373,970 + -0.6 373,970 + +1.9 373,971 - -1.2 374,098 + RR42_RS22455 0.13 -2.2 374,098 + RR42_RS22455 0.13 +2.0 374,098 + RR42_RS22455 0.13 -3.1 374,098 + RR42_RS22455 0.13 -0.8 374,098 + RR42_RS22455 0.13 -1.7 374,099 - RR42_RS22455 0.13 -2.3 374,099 - RR42_RS22455 0.13 -0.7 374,099 - -0.6 374,099 - RR42_RS22455 0.13 -1.0 374,257 + RR42_RS22455 0.28 -2.3 374,438 + RR42_RS22455 0.45 -0.5 374,438 + RR42_RS22455 0.45 +0.7 374,438 + RR42_RS22455 0.45 -0.8 374,439 - RR42_RS22455 0.45 -2.1 374,439 - RR42_RS22455 0.45 -0.5 374,439 - RR42_RS22455 0.45 -0.8 374,605 + RR42_RS22455 0.60 -1.5 374,605 + RR42_RS22455 0.60 +0.3 374,606 - RR42_RS22455 0.60 -0.4 374,608 + RR42_RS22455 0.61 -1.3 374,608 + RR42_RS22455 0.61 -1.1 374,652 + RR42_RS22455 0.65 -2.3 374,652 + RR42_RS22455 0.65 -2.4 374,661 + RR42_RS22455 0.66 -1.3 374,672 + RR42_RS22455 0.67 -1.2 374,672 + RR42_RS22455 0.67 -0.9 374,672 + RR42_RS22455 0.67 -1.2 374,672 + RR42_RS22455 0.67 -1.3 374,672 + RR42_RS22455 0.67 -0.8 374,672 + RR42_RS22455 0.67 -1.0 374,673 - RR42_RS22455 0.67 -1.1 374,680 + RR42_RS22455 0.67 -1.0 374,680 + RR42_RS22455 0.67 -0.6 374,681 - RR42_RS22455 0.67 -1.5 374,681 - RR42_RS22455 0.67 -2.0 374,681 - RR42_RS22455 0.67 -1.4 374,683 + RR42_RS22455 0.68 -0.7 374,870 - RR42_RS22455 0.85 -4.9 374,914 + RR42_RS22455 0.89 +0.7 374,915 - RR42_RS22455 0.89 -2.1 374,915 - RR42_RS22455 0.89 +1.4 374,915 - RR42_RS22455 0.89 -0.7 374,915 - RR42_RS22455 0.89 -0.9 374,933 + -1.0
Or see this region's nucleotide sequence