Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09160

Experiment: R2A with Lomefloxacin 0.00075 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS09150 and RR42_RS09155 are separated by 29 nucleotidesRR42_RS09155 and RR42_RS09160 are separated by 61 nucleotidesRR42_RS09160 and RR42_RS09165 are separated by 147 nucleotidesRR42_RS09165 and RR42_RS09170 overlap by 4 nucleotides RR42_RS09150: RR42_RS09150 - molybdopterin-binding protein, at 1,934,900 to 1,935,652 _RS09150 RR42_RS09155: RR42_RS09155 - thioredoxin reductase, at 1,935,682 to 1,936,329 _RS09155 RR42_RS09160: RR42_RS09160 - hypothetical protein, at 1,936,391 to 1,937,032 _RS09160 RR42_RS09165: RR42_RS09165 - transcriptional regulator, at 1,937,180 to 1,937,851 _RS09165 RR42_RS09170: RR42_RS09170 - histidine kinase, at 1,937,848 to 1,939,272 _RS09170 Position (kb) 1936 1937 1938Strain fitness (log2 ratio) -3 -2 -1 0 1at 1935.426 kb on + strand, within RR42_RS09150at 1935.427 kb on - strand, within RR42_RS09150at 1935.935 kb on + strand, within RR42_RS09155at 1935.935 kb on + strand, within RR42_RS09155at 1935.935 kb on + strand, within RR42_RS09155at 1935.935 kb on + strand, within RR42_RS09155at 1935.935 kb on + strand, within RR42_RS09155at 1935.935 kb on + strand, within RR42_RS09155at 1935.936 kb on - strand, within RR42_RS09155at 1935.936 kb on - strand, within RR42_RS09155at 1935.936 kb on - strand, within RR42_RS09155at 1935.936 kb on - strand, within RR42_RS09155at 1935.936 kb on - strand, within RR42_RS09155at 1935.936 kb on - strand, within RR42_RS09155at 1935.960 kb on - strand, within RR42_RS09155at 1936.073 kb on + strand, within RR42_RS09155at 1936.073 kb on + strand, within RR42_RS09155at 1936.083 kb on - strand, within RR42_RS09155at 1936.205 kb on + strand, within RR42_RS09155at 1936.392 kb on + strandat 1936.392 kb on + strandat 1936.392 kb on + strandat 1936.393 kb on - strandat 1936.430 kb on - strandat 1936.588 kb on + strand, within RR42_RS09160at 1936.589 kb on - strand, within RR42_RS09160at 1936.763 kb on - strand, within RR42_RS09160at 1936.764 kb on + strand, within RR42_RS09160at 1936.764 kb on + strand, within RR42_RS09160at 1936.764 kb on + strand, within RR42_RS09160at 1936.764 kb on + strand, within RR42_RS09160at 1936.764 kb on + strand, within RR42_RS09160at 1936.764 kb on + strand, within RR42_RS09160at 1936.765 kb on - strand, within RR42_RS09160at 1936.765 kb on - strand, within RR42_RS09160at 1936.765 kb on - strand, within RR42_RS09160at 1937.002 kb on + strandat 1937.002 kb on + strandat 1937.014 kb on + strandat 1937.065 kb on + strandat 1937.066 kb on - strandat 1937.066 kb on - strandat 1937.066 kb on - strandat 1937.070 kb on + strandat 1937.143 kb on + strandat 1937.144 kb on - strandat 1937.144 kb on - strandat 1937.144 kb on - strandat 1937.312 kb on + strand, within RR42_RS09165at 1937.312 kb on + strand, within RR42_RS09165at 1937.313 kb on - strand, within RR42_RS09165at 1937.313 kb on - strand, within RR42_RS09165at 1937.313 kb on - strand, within RR42_RS09165at 1937.313 kb on - strand, within RR42_RS09165at 1937.468 kb on + strand, within RR42_RS09165at 1937.810 kb on - strandat 1937.831 kb on - strandat 1937.831 kb on - strandat 1937.939 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.00075 mM
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1,935,426 + RR42_RS09150 0.70 -0.4
1,935,427 - RR42_RS09150 0.70 -3.0
1,935,935 + RR42_RS09155 0.39 +0.1
1,935,935 + RR42_RS09155 0.39 -0.2
1,935,935 + RR42_RS09155 0.39 +1.5
1,935,935 + RR42_RS09155 0.39 +1.3
1,935,935 + RR42_RS09155 0.39 +0.4
1,935,935 + RR42_RS09155 0.39 +0.0
1,935,936 - RR42_RS09155 0.39 -0.7
1,935,936 - RR42_RS09155 0.39 -0.6
1,935,936 - RR42_RS09155 0.39 -0.1
1,935,936 - RR42_RS09155 0.39 -1.3
1,935,936 - RR42_RS09155 0.39 -0.8
1,935,936 - RR42_RS09155 0.39 +0.1
1,935,960 - RR42_RS09155 0.43 -0.1
1,936,073 + RR42_RS09155 0.60 -1.3
1,936,073 + RR42_RS09155 0.60 -0.5
1,936,083 - RR42_RS09155 0.62 +0.0
1,936,205 + RR42_RS09155 0.81 +0.7
1,936,392 + +0.6
1,936,392 + -0.6
1,936,392 + -0.0
1,936,393 - -0.9
1,936,430 - +0.7
1,936,588 + RR42_RS09160 0.31 -0.4
1,936,589 - RR42_RS09160 0.31 -0.3
1,936,763 - RR42_RS09160 0.58 -1.1
1,936,764 + RR42_RS09160 0.58 -1.3
1,936,764 + RR42_RS09160 0.58 -1.1
1,936,764 + RR42_RS09160 0.58 -0.4
1,936,764 + RR42_RS09160 0.58 +0.1
1,936,764 + RR42_RS09160 0.58 +0.1
1,936,764 + RR42_RS09160 0.58 +0.1
1,936,765 - RR42_RS09160 0.58 -0.1
1,936,765 - RR42_RS09160 0.58 -0.6
1,936,765 - RR42_RS09160 0.58 -0.8
1,937,002 + +0.2
1,937,002 + -0.3
1,937,014 + +0.7
1,937,065 + -1.7
1,937,066 - -0.1
1,937,066 - -0.2
1,937,066 - +1.3
1,937,070 + -0.3
1,937,143 + -0.0
1,937,144 - +0.4
1,937,144 - +1.4
1,937,144 - -1.4
1,937,312 + RR42_RS09165 0.20 -0.1
1,937,312 + RR42_RS09165 0.20 -0.3
1,937,313 - RR42_RS09165 0.20 -0.9
1,937,313 - RR42_RS09165 0.20 -0.6
1,937,313 - RR42_RS09165 0.20 +0.2
1,937,313 - RR42_RS09165 0.20 +0.7
1,937,468 + RR42_RS09165 0.43 -0.7
1,937,810 - -1.2
1,937,831 - -0.1
1,937,831 - +0.7
1,937,939 - +0.4

Or see this region's nucleotide sequence