Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05600

Experiment: R2A with Lomefloxacin 0.00075 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05595 and RR42_RS05600 are separated by 13 nucleotidesRR42_RS05600 and RR42_RS05605 are separated by 145 nucleotidesRR42_RS05605 and RR42_RS05610 are separated by 83 nucleotides RR42_RS05595: RR42_RS05595 - acyl-CoA dehydrogenase, at 1,231,906 to 1,233,108 _RS05595 RR42_RS05600: RR42_RS05600 - acyl-CoA dehydrogenase, at 1,233,122 to 1,234,240 _RS05600 RR42_RS05605: RR42_RS05605 - dehydratase, at 1,234,386 to 1,234,835 _RS05605 RR42_RS05610: RR42_RS05610 - dehydratase, at 1,234,919 to 1,235,398 _RS05610 Position (kb) 1233 1234 1235Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1232.130 kb on + strand, within RR42_RS05595at 1232.216 kb on - strand, within RR42_RS05595at 1232.239 kb on + strand, within RR42_RS05595at 1232.240 kb on - strand, within RR42_RS05595at 1232.243 kb on - strand, within RR42_RS05595at 1232.362 kb on + strand, within RR42_RS05595at 1232.363 kb on - strand, within RR42_RS05595at 1232.363 kb on - strand, within RR42_RS05595at 1232.363 kb on - strand, within RR42_RS05595at 1232.627 kb on - strand, within RR42_RS05595at 1232.956 kb on + strand, within RR42_RS05595at 1233.022 kb on + strandat 1233.023 kb on - strandat 1233.023 kb on - strandat 1233.050 kb on - strandat 1233.686 kb on - strand, within RR42_RS05600at 1233.686 kb on - strand, within RR42_RS05600at 1233.692 kb on + strand, within RR42_RS05600at 1233.724 kb on + strand, within RR42_RS05600at 1233.725 kb on - strand, within RR42_RS05600at 1233.872 kb on + strand, within RR42_RS05600at 1233.872 kb on + strand, within RR42_RS05600at 1234.356 kb on - strandat 1234.398 kb on + strandat 1234.485 kb on + strand, within RR42_RS05605at 1234.486 kb on - strand, within RR42_RS05605at 1234.486 kb on - strand, within RR42_RS05605at 1234.486 kb on - strand, within RR42_RS05605at 1234.486 kb on - strand, within RR42_RS05605at 1234.536 kb on + strand, within RR42_RS05605at 1234.536 kb on + strand, within RR42_RS05605at 1234.537 kb on - strand, within RR42_RS05605at 1234.537 kb on - strand, within RR42_RS05605at 1234.668 kb on + strand, within RR42_RS05605at 1234.668 kb on + strand, within RR42_RS05605at 1234.815 kb on + strandat 1234.815 kb on + strandat 1234.815 kb on + strandat 1234.816 kb on - strandat 1234.816 kb on - strandat 1234.816 kb on - strandat 1234.816 kb on - strandat 1234.816 kb on - strandat 1234.884 kb on + strandat 1234.884 kb on + strandat 1234.884 kb on + strandat 1234.885 kb on - strandat 1234.885 kb on - strandat 1234.893 kb on + strandat 1234.893 kb on + strandat 1234.894 kb on - strandat 1234.894 kb on - strandat 1234.902 kb on + strandat 1234.902 kb on + strandat 1234.925 kb on - strandat 1235.187 kb on - strand, within RR42_RS05610at 1235.209 kb on + strand, within RR42_RS05610

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.00075 mM
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1,232,130 + RR42_RS05595 0.19 -0.1
1,232,216 - RR42_RS05595 0.26 +1.2
1,232,239 + RR42_RS05595 0.28 +0.4
1,232,240 - RR42_RS05595 0.28 +1.8
1,232,243 - RR42_RS05595 0.28 +0.7
1,232,362 + RR42_RS05595 0.38 +0.4
1,232,363 - RR42_RS05595 0.38 -0.6
1,232,363 - RR42_RS05595 0.38 +0.7
1,232,363 - RR42_RS05595 0.38 +0.7
1,232,627 - RR42_RS05595 0.60 +1.8
1,232,956 + RR42_RS05595 0.87 -0.8
1,233,022 + +0.3
1,233,023 - -0.5
1,233,023 - -0.2
1,233,050 - -1.3
1,233,686 - RR42_RS05600 0.50 +0.7
1,233,686 - RR42_RS05600 0.50 +0.3
1,233,692 + RR42_RS05600 0.51 -1.9
1,233,724 + RR42_RS05600 0.54 -0.4
1,233,725 - RR42_RS05600 0.54 +0.4
1,233,872 + RR42_RS05600 0.67 +1.2
1,233,872 + RR42_RS05600 0.67 +0.4
1,234,356 - -1.1
1,234,398 + -0.1
1,234,485 + RR42_RS05605 0.22 -0.3
1,234,486 - RR42_RS05605 0.22 -0.1
1,234,486 - RR42_RS05605 0.22 -1.8
1,234,486 - RR42_RS05605 0.22 -0.8
1,234,486 - RR42_RS05605 0.22 +0.1
1,234,536 + RR42_RS05605 0.33 -1.3
1,234,536 + RR42_RS05605 0.33 +1.7
1,234,537 - RR42_RS05605 0.34 -0.1
1,234,537 - RR42_RS05605 0.34 +0.3
1,234,668 + RR42_RS05605 0.63 +0.4
1,234,668 + RR42_RS05605 0.63 -0.8
1,234,815 + +0.9
1,234,815 + -0.3
1,234,815 + -0.2
1,234,816 - +0.2
1,234,816 - +2.8
1,234,816 - -0.1
1,234,816 - -1.0
1,234,816 - +0.3
1,234,884 + +0.8
1,234,884 + +0.7
1,234,884 + +0.3
1,234,885 - +0.2
1,234,885 - -0.2
1,234,893 + -0.5
1,234,893 + -1.1
1,234,894 - -0.1
1,234,894 - +0.1
1,234,902 + +0.7
1,234,902 + +1.0
1,234,925 - +1.2
1,235,187 - RR42_RS05610 0.56 -0.8
1,235,209 + RR42_RS05610 0.60 -0.6

Or see this region's nucleotide sequence