Experiment: R2A with Lomefloxacin 0.00075 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03945 and RR42_RS03950 are separated by 17 nucleotides RR42_RS03950 and RR42_RS03955 are separated by 208 nucleotides RR42_RS03955 and RR42_RS03960 are separated by 49 nucleotides
RR42_RS03945: RR42_RS03945 - chloride channel protein, at 870,223 to 871,962
_RS03945
RR42_RS03950: RR42_RS03950 - AsnC family transcriptional regulator, at 871,980 to 872,402
_RS03950
RR42_RS03955: RR42_RS03955 - amidinotransferase, at 872,611 to 873,510
_RS03955
RR42_RS03960: RR42_RS03960 - ornithine cyclodeaminase, at 873,560 to 874,636
_RS03960
Position (kb) 872
873
874 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 871.982 kb on - strand at 871.991 kb on - strand at 871.991 kb on - strand at 872.653 kb on + strand at 872.653 kb on + strand at 872.654 kb on - strand at 872.654 kb on - strand at 873.139 kb on + strand, within RR42_RS03955 at 873.139 kb on + strand, within RR42_RS03955 at 873.139 kb on + strand, within RR42_RS03955 at 873.140 kb on - strand, within RR42_RS03955 at 873.140 kb on - strand, within RR42_RS03955 at 873.187 kb on + strand, within RR42_RS03955 at 873.188 kb on - strand, within RR42_RS03955 at 873.188 kb on - strand, within RR42_RS03955 at 873.190 kb on + strand, within RR42_RS03955 at 873.396 kb on - strand, within RR42_RS03955 at 873.403 kb on + strand, within RR42_RS03955 at 873.403 kb on + strand, within RR42_RS03955 at 873.403 kb on + strand, within RR42_RS03955 at 873.403 kb on + strand, within RR42_RS03955 at 873.404 kb on - strand, within RR42_RS03955 at 873.404 kb on - strand, within RR42_RS03955 at 873.771 kb on - strand, within RR42_RS03960 at 873.771 kb on - strand, within RR42_RS03960 at 873.782 kb on + strand, within RR42_RS03960 at 873.782 kb on + strand, within RR42_RS03960 at 873.782 kb on + strand, within RR42_RS03960 at 873.782 kb on + strand, within RR42_RS03960 at 873.783 kb on - strand, within RR42_RS03960 at 874.053 kb on - strand, within RR42_RS03960 at 874.237 kb on + strand, within RR42_RS03960 at 874.237 kb on + strand, within RR42_RS03960 at 874.238 kb on - strand, within RR42_RS03960
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.00075 mM remove 871,982 - -0.4 871,991 - -0.5 871,991 - -0.4 872,653 + -0.0 872,653 + -3.2 872,654 - -1.1 872,654 - -0.1 873,139 + RR42_RS03955 0.59 +0.4 873,139 + RR42_RS03955 0.59 +0.1 873,139 + RR42_RS03955 0.59 +0.3 873,140 - RR42_RS03955 0.59 -0.6 873,140 - RR42_RS03955 0.59 -0.2 873,187 + RR42_RS03955 0.64 +2.6 873,188 - RR42_RS03955 0.64 -0.5 873,188 - RR42_RS03955 0.64 -0.6 873,190 + RR42_RS03955 0.64 +0.1 873,396 - RR42_RS03955 0.87 +1.7 873,403 + RR42_RS03955 0.88 -0.2 873,403 + RR42_RS03955 0.88 -0.1 873,403 + RR42_RS03955 0.88 +0.2 873,403 + RR42_RS03955 0.88 -1.0 873,404 - RR42_RS03955 0.88 +1.3 873,404 - RR42_RS03955 0.88 -0.1 873,771 - RR42_RS03960 0.20 +0.4 873,771 - RR42_RS03960 0.20 -0.7 873,782 + RR42_RS03960 0.21 +0.3 873,782 + RR42_RS03960 0.21 +0.1 873,782 + RR42_RS03960 0.21 -0.1 873,782 + RR42_RS03960 0.21 +0.0 873,783 - RR42_RS03960 0.21 -0.6 874,053 - RR42_RS03960 0.46 +0.5 874,237 + RR42_RS03960 0.63 -2.9 874,237 + RR42_RS03960 0.63 +1.4 874,238 - RR42_RS03960 0.63 -0.1
Or see this region's nucleotide sequence