Experiment: R2A with Lomefloxacin 0.00075 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01645 and RR42_RS01650 are separated by 102 nucleotides RR42_RS01650 and RR42_RS01655 are separated by 160 nucleotides
RR42_RS01645: RR42_RS01645 - ABC transporter permease, at 374,995 to 376,329
_RS01645
RR42_RS01650: RR42_RS01650 - branched-chain amino acid ABC transporter ATP-binding protein, at 376,432 to 377,247
_RS01650
RR42_RS01655: RR42_RS01655 - AMP-dependent synthetase, at 377,408 to 378,658
_RS01655
Position (kb) 376
377
378 Strain fitness (log2 ratio) -1
0
1 at 375.541 kb on + strand, within RR42_RS01645 at 375.541 kb on + strand, within RR42_RS01645 at 375.541 kb on + strand, within RR42_RS01645 at 375.547 kb on + strand, within RR42_RS01645 at 375.563 kb on - strand, within RR42_RS01645 at 375.563 kb on - strand, within RR42_RS01645 at 375.697 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.845 kb on - strand, within RR42_RS01645 at 375.845 kb on - strand, within RR42_RS01645 at 375.846 kb on + strand, within RR42_RS01645 at 375.846 kb on + strand, within RR42_RS01645 at 375.933 kb on + strand, within RR42_RS01645 at 375.934 kb on - strand, within RR42_RS01645 at 375.967 kb on + strand, within RR42_RS01645 at 375.968 kb on - strand, within RR42_RS01645 at 375.968 kb on - strand, within RR42_RS01645 at 376.030 kb on + strand, within RR42_RS01645 at 376.031 kb on - strand, within RR42_RS01645 at 376.456 kb on - strand at 376.468 kb on + strand at 376.468 kb on + strand at 376.469 kb on - strand at 376.469 kb on - strand at 376.760 kb on - strand, within RR42_RS01650 at 376.760 kb on - strand, within RR42_RS01650 at 376.761 kb on + strand, within RR42_RS01650 at 376.761 kb on + strand, within RR42_RS01650 at 376.761 kb on + strand, within RR42_RS01650 at 376.811 kb on - strand, within RR42_RS01650 at 377.060 kb on - strand, within RR42_RS01650 at 377.074 kb on + strand, within RR42_RS01650 at 377.075 kb on - strand, within RR42_RS01650 at 377.152 kb on + strand, within RR42_RS01650 at 377.152 kb on + strand, within RR42_RS01650 at 377.153 kb on - strand, within RR42_RS01650 at 377.218 kb on + strand at 377.218 kb on + strand at 377.218 kb on + strand at 377.370 kb on - strand at 377.392 kb on - strand at 377.400 kb on + strand at 377.401 kb on - strand at 377.417 kb on + strand at 377.517 kb on - strand at 377.786 kb on + strand, within RR42_RS01655 at 377.786 kb on + strand, within RR42_RS01655 at 377.801 kb on + strand, within RR42_RS01655 at 378.089 kb on + strand, within RR42_RS01655 at 378.089 kb on + strand, within RR42_RS01655 at 378.090 kb on - strand, within RR42_RS01655
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.00075 mM remove 375,541 + RR42_RS01645 0.41 +0.7 375,541 + RR42_RS01645 0.41 -0.5 375,541 + RR42_RS01645 0.41 -0.1 375,547 + RR42_RS01645 0.41 -0.4 375,563 - RR42_RS01645 0.43 -0.3 375,563 - RR42_RS01645 0.43 +0.4 375,697 + RR42_RS01645 0.53 +0.7 375,844 + RR42_RS01645 0.64 -1.0 375,844 + RR42_RS01645 0.64 -0.8 375,844 + RR42_RS01645 0.64 -0.8 375,844 + RR42_RS01645 0.64 -0.7 375,844 + RR42_RS01645 0.64 +0.2 375,845 - RR42_RS01645 0.64 -0.6 375,845 - RR42_RS01645 0.64 +0.7 375,846 + RR42_RS01645 0.64 -0.2 375,846 + RR42_RS01645 0.64 +0.7 375,933 + RR42_RS01645 0.70 +0.6 375,934 - RR42_RS01645 0.70 +0.5 375,967 + RR42_RS01645 0.73 +0.9 375,968 - RR42_RS01645 0.73 -0.7 375,968 - RR42_RS01645 0.73 +0.5 376,030 + RR42_RS01645 0.78 -0.2 376,031 - RR42_RS01645 0.78 +0.3 376,456 - +0.6 376,468 + -0.6 376,468 + +1.1 376,469 - +0.3 376,469 - -0.3 376,760 - RR42_RS01650 0.40 +0.4 376,760 - RR42_RS01650 0.40 +0.4 376,761 + RR42_RS01650 0.40 -1.2 376,761 + RR42_RS01650 0.40 +0.2 376,761 + RR42_RS01650 0.40 +0.1 376,811 - RR42_RS01650 0.46 -0.2 377,060 - RR42_RS01650 0.77 +0.3 377,074 + RR42_RS01650 0.79 -1.6 377,075 - RR42_RS01650 0.79 +1.7 377,152 + RR42_RS01650 0.88 -1.4 377,152 + RR42_RS01650 0.88 +0.5 377,153 - RR42_RS01650 0.88 -0.0 377,218 + -0.1 377,218 + -0.8 377,218 + -0.3 377,370 - +0.4 377,392 - -0.3 377,400 + +0.1 377,401 - -0.3 377,417 + +0.9 377,517 - -0.5 377,786 + RR42_RS01655 0.30 -0.4 377,786 + RR42_RS01655 0.30 -0.1 377,801 + RR42_RS01655 0.31 -0.5 378,089 + RR42_RS01655 0.54 -1.4 378,089 + RR42_RS01655 0.54 -0.3 378,090 - RR42_RS01655 0.55 -0.8
Or see this region's nucleotide sequence