Experiment: R2A with Lomefloxacin 0.00075 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01175 and RR42_RS01180 are separated by 100 nucleotides RR42_RS01180 and RR42_RS01185 are separated by 157 nucleotides
RR42_RS01175: RR42_RS01175 - membrane protein, at 269,239 to 270,183
_RS01175
RR42_RS01180: RR42_RS01180 - acyl-CoA thioesterase, at 270,284 to 271,114
_RS01180
RR42_RS01185: RR42_RS01185 - muropeptide transporter, at 271,272 to 272,528
_RS01185
Position (kb) 270
271
272 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 269.523 kb on + strand, within RR42_RS01175 at 269.566 kb on + strand, within RR42_RS01175 at 269.566 kb on + strand, within RR42_RS01175 at 269.566 kb on + strand, within RR42_RS01175 at 269.567 kb on - strand, within RR42_RS01175 at 269.596 kb on + strand, within RR42_RS01175 at 269.785 kb on + strand, within RR42_RS01175 at 269.956 kb on - strand, within RR42_RS01175 at 269.968 kb on + strand, within RR42_RS01175 at 269.968 kb on + strand, within RR42_RS01175 at 269.968 kb on + strand, within RR42_RS01175 at 269.968 kb on + strand, within RR42_RS01175 at 269.969 kb on - strand, within RR42_RS01175 at 269.969 kb on - strand, within RR42_RS01175 at 269.969 kb on - strand, within RR42_RS01175 at 269.969 kb on - strand, within RR42_RS01175 at 269.980 kb on + strand, within RR42_RS01175 at 269.980 kb on + strand, within RR42_RS01175 at 269.980 kb on + strand, within RR42_RS01175 at 269.980 kb on + strand, within RR42_RS01175 at 269.981 kb on - strand, within RR42_RS01175 at 269.981 kb on - strand, within RR42_RS01175 at 269.981 kb on - strand, within RR42_RS01175 at 269.981 kb on - strand, within RR42_RS01175 at 270.034 kb on + strand, within RR42_RS01175 at 270.387 kb on - strand, within RR42_RS01180 at 270.737 kb on + strand, within RR42_RS01180 at 270.737 kb on + strand, within RR42_RS01180 at 270.737 kb on + strand, within RR42_RS01180 at 270.944 kb on + strand, within RR42_RS01180 at 270.944 kb on + strand, within RR42_RS01180 at 270.944 kb on + strand, within RR42_RS01180 at 270.944 kb on + strand, within RR42_RS01180 at 270.945 kb on - strand, within RR42_RS01180 at 271.103 kb on + strand at 271.103 kb on + strand at 271.103 kb on + strand at 271.103 kb on + strand at 271.104 kb on - strand at 271.104 kb on - strand at 271.104 kb on - strand at 271.104 kb on - strand at 271.104 kb on - strand at 271.112 kb on + strand at 271.112 kb on + strand at 271.112 kb on + strand at 271.113 kb on - strand at 271.113 kb on - strand at 271.113 kb on - strand at 271.171 kb on - strand at 271.171 kb on - strand at 271.233 kb on - strand at 271.273 kb on + strand at 271.300 kb on + strand at 271.330 kb on - strand at 271.339 kb on - strand at 271.372 kb on + strand at 271.373 kb on - strand at 271.426 kb on + strand, within RR42_RS01185 at 271.427 kb on - strand, within RR42_RS01185 at 271.427 kb on - strand, within RR42_RS01185 at 271.610 kb on - strand, within RR42_RS01185 at 271.660 kb on + strand, within RR42_RS01185 at 271.660 kb on + strand, within RR42_RS01185 at 271.826 kb on - strand, within RR42_RS01185 at 271.996 kb on + strand, within RR42_RS01185 at 271.997 kb on - strand, within RR42_RS01185 at 271.997 kb on - strand, within RR42_RS01185
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.00075 mM remove 269,523 + RR42_RS01175 0.30 -0.4 269,566 + RR42_RS01175 0.35 -0.5 269,566 + RR42_RS01175 0.35 +0.1 269,566 + RR42_RS01175 0.35 -0.1 269,567 - RR42_RS01175 0.35 +0.2 269,596 + RR42_RS01175 0.38 +0.4 269,785 + RR42_RS01175 0.58 -0.2 269,956 - RR42_RS01175 0.76 +0.3 269,968 + RR42_RS01175 0.77 -1.0 269,968 + RR42_RS01175 0.77 -0.3 269,968 + RR42_RS01175 0.77 +1.1 269,968 + RR42_RS01175 0.77 +0.2 269,969 - RR42_RS01175 0.77 -0.2 269,969 - RR42_RS01175 0.77 +0.3 269,969 - RR42_RS01175 0.77 +0.1 269,969 - RR42_RS01175 0.77 -1.3 269,980 + RR42_RS01175 0.78 +0.1 269,980 + RR42_RS01175 0.78 -0.3 269,980 + RR42_RS01175 0.78 +0.0 269,980 + RR42_RS01175 0.78 +1.7 269,981 - RR42_RS01175 0.79 -0.1 269,981 - RR42_RS01175 0.79 +0.8 269,981 - RR42_RS01175 0.79 -0.5 269,981 - RR42_RS01175 0.79 -0.5 270,034 + RR42_RS01175 0.84 -0.2 270,387 - RR42_RS01180 0.12 -0.9 270,737 + RR42_RS01180 0.55 +0.2 270,737 + RR42_RS01180 0.55 +1.1 270,737 + RR42_RS01180 0.55 +1.1 270,944 + RR42_RS01180 0.79 -0.1 270,944 + RR42_RS01180 0.79 +0.6 270,944 + RR42_RS01180 0.79 -0.1 270,944 + RR42_RS01180 0.79 +0.9 270,945 - RR42_RS01180 0.80 +1.0 271,103 + +1.1 271,103 + +0.2 271,103 + +0.5 271,103 + +0.5 271,104 - +0.6 271,104 - -0.9 271,104 - -0.5 271,104 - +0.4 271,104 - +0.6 271,112 + -0.7 271,112 + -3.1 271,112 + +0.7 271,113 - -0.3 271,113 - +0.2 271,113 - +0.6 271,171 - -1.5 271,171 - +0.5 271,233 - -0.8 271,273 + +0.9 271,300 + -0.1 271,330 - +0.0 271,339 - +1.1 271,372 + -0.4 271,373 - -0.7 271,426 + RR42_RS01185 0.12 +1.1 271,427 - RR42_RS01185 0.12 +0.1 271,427 - RR42_RS01185 0.12 +0.3 271,610 - RR42_RS01185 0.27 +0.6 271,660 + RR42_RS01185 0.31 -0.0 271,660 + RR42_RS01185 0.31 -0.3 271,826 - RR42_RS01185 0.44 +0.3 271,996 + RR42_RS01185 0.58 +0.1 271,997 - RR42_RS01185 0.58 +1.2 271,997 - RR42_RS01185 0.58 -0.0
Or see this region's nucleotide sequence