Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5820 and Pf1N1B4_5821 overlap by 6 nucleotides Pf1N1B4_5821 and Pf1N1B4_5822 are separated by 290 nucleotides
Pf1N1B4_5820 - Transcriptional regulator, Cro/CI family, at 254,204 to 254,767
_5820
Pf1N1B4_5821 - Permease of the drug/metabolite transporter (DMT) superfamily, at 254,762 to 255,790
_5821
Pf1N1B4_5822 - Na(+) H(+) antiporter subunit A / Na(+) H(+) antiporter subunit B, at 256,081 to 258,957
_5822
Position (kb) 254
255
256 Strain fitness (log2 ratio) -2
-1
0
1
2 at 253.772 kb on - strand at 253.887 kb on - strand at 253.891 kb on + strand at 253.892 kb on - strand at 253.892 kb on - strand at 253.892 kb on - strand at 253.892 kb on - strand at 253.913 kb on - strand at 253.913 kb on - strand at 253.913 kb on - strand at 253.913 kb on - strand at 253.914 kb on + strand at 253.914 kb on + strand at 253.915 kb on - strand at 253.915 kb on - strand at 253.915 kb on - strand at 254.014 kb on - strand at 254.069 kb on - strand at 254.069 kb on - strand at 254.069 kb on - strand at 254.069 kb on - strand at 254.069 kb on - strand at 254.069 kb on - strand at 254.151 kb on - strand at 254.169 kb on + strand at 254.169 kb on + strand at 254.170 kb on - strand at 254.170 kb on - strand at 254.170 kb on - strand at 254.172 kb on - strand at 254.172 kb on - strand at 254.172 kb on - strand at 254.172 kb on - strand at 254.172 kb on - strand at 254.173 kb on + strand at 254.173 kb on + strand at 254.173 kb on + strand at 254.174 kb on - strand at 254.174 kb on - strand at 254.174 kb on - strand at 254.174 kb on - strand at 254.174 kb on - strand at 254.273 kb on - strand, within Pf1N1B4_5820 at 254.285 kb on - strand, within Pf1N1B4_5820 at 254.355 kb on + strand, within Pf1N1B4_5820 at 254.356 kb on - strand, within Pf1N1B4_5820 at 254.356 kb on - strand, within Pf1N1B4_5820 at 254.356 kb on - strand, within Pf1N1B4_5820 at 254.369 kb on - strand, within Pf1N1B4_5820 at 254.371 kb on - strand, within Pf1N1B4_5820 at 254.564 kb on + strand, within Pf1N1B4_5820 at 254.770 kb on + strand at 254.799 kb on + strand at 254.932 kb on + strand, within Pf1N1B4_5821 at 254.932 kb on + strand, within Pf1N1B4_5821 at 254.933 kb on - strand, within Pf1N1B4_5821 at 255.057 kb on + strand, within Pf1N1B4_5821 at 255.188 kb on + strand, within Pf1N1B4_5821 at 255.188 kb on + strand, within Pf1N1B4_5821 at 255.188 kb on + strand, within Pf1N1B4_5821 at 255.188 kb on + strand, within Pf1N1B4_5821 at 255.392 kb on + strand at 255.392 kb on + strand, within Pf1N1B4_5821 at 255.392 kb on + strand, within Pf1N1B4_5821 at 255.392 kb on + strand, within Pf1N1B4_5821 at 255.393 kb on - strand, within Pf1N1B4_5821 at 255.411 kb on + strand, within Pf1N1B4_5821 at 255.411 kb on + strand, within Pf1N1B4_5821 at 255.412 kb on - strand, within Pf1N1B4_5821 at 255.611 kb on + strand, within Pf1N1B4_5821 at 255.611 kb on + strand, within Pf1N1B4_5821 at 255.945 kb on - strand at 255.991 kb on + strand at 255.991 kb on + strand at 256.018 kb on + strand at 256.026 kb on + strand at 256.037 kb on + strand at 256.037 kb on + strand at 256.044 kb on - strand at 256.321 kb on + strand at 256.321 kb on + strand at 256.322 kb on - strand at 256.322 kb on - strand at 256.322 kb on - strand at 256.507 kb on + strand, within Pf1N1B4_5822 at 256.507 kb on + strand, within Pf1N1B4_5822 at 256.508 kb on - strand, within Pf1N1B4_5822 at 256.588 kb on + strand, within Pf1N1B4_5822
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 253,772 - -1.2 253,887 - -0.2 253,891 + -1.2 253,892 - -1.2 253,892 - +1.8 253,892 - -0.2 253,892 - -0.2 253,913 - +1.4 253,913 - -0.8 253,913 - +0.8 253,913 - -1.8 253,914 + -0.2 253,914 + +0.8 253,915 - +0.2 253,915 - -0.8 253,915 - +0.5 254,014 - -0.2 254,069 - +0.8 254,069 - +0.8 254,069 - +2.1 254,069 - -0.2 254,069 - -1.2 254,069 - +1.0 254,151 - -1.2 254,169 + -0.3 254,169 + +0.8 254,170 - -0.2 254,170 - +0.2 254,170 - -0.2 254,172 - +1.4 254,172 - +0.4 254,172 - +2.1 254,172 - -1.2 254,172 - +0.8 254,173 + -0.2 254,173 + -0.2 254,173 + -0.9 254,174 - +2.0 254,174 - +0.4 254,174 - +1.8 254,174 - +0.4 254,174 - +1.8 254,273 - Pf1N1B4_5820 0.12 +0.6 254,285 - Pf1N1B4_5820 0.14 -0.8 254,355 + Pf1N1B4_5820 0.27 -1.2 254,356 - Pf1N1B4_5820 0.27 +0.5 254,356 - Pf1N1B4_5820 0.27 -1.8 254,356 - Pf1N1B4_5820 0.27 -0.5 254,369 - Pf1N1B4_5820 0.29 +0.2 254,371 - Pf1N1B4_5820 0.30 +1.4 254,564 + Pf1N1B4_5820 0.64 +0.8 254,770 + -0.2 254,799 + +0.8 254,932 + Pf1N1B4_5821 0.17 +0.4 254,932 + Pf1N1B4_5821 0.17 +0.8 254,933 - Pf1N1B4_5821 0.17 +0.8 255,057 + Pf1N1B4_5821 0.29 +1.4 255,188 + Pf1N1B4_5821 0.41 +1.2 255,188 + Pf1N1B4_5821 0.41 -0.2 255,188 + Pf1N1B4_5821 0.41 +0.5 255,188 + Pf1N1B4_5821 0.41 +1.8 255,392 + -1.2 255,392 + Pf1N1B4_5821 0.61 +0.5 255,392 + Pf1N1B4_5821 0.61 -0.8 255,392 + Pf1N1B4_5821 0.61 -0.8 255,393 - Pf1N1B4_5821 0.61 +0.8 255,411 + Pf1N1B4_5821 0.63 +1.6 255,411 + Pf1N1B4_5821 0.63 +1.4 255,412 - Pf1N1B4_5821 0.63 +1.2 255,611 + Pf1N1B4_5821 0.83 +0.5 255,611 + Pf1N1B4_5821 0.83 -0.2 255,945 - -1.2 255,991 + +0.4 255,991 + +0.8 256,018 + +1.4 256,026 + +0.5 256,037 + +1.4 256,037 + -1.2 256,044 - -1.8 256,321 + -1.2 256,321 + -1.2 256,322 - -1.8 256,322 - +0.8 256,322 - +0.5 256,507 + Pf1N1B4_5822 0.15 +1.8 256,507 + Pf1N1B4_5822 0.15 +2.4 256,508 - Pf1N1B4_5822 0.15 +0.4 256,588 + Pf1N1B4_5822 0.18 -0.5
Or see this region's nucleotide sequence