Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5576 and Pf1N1B4_5577 are separated by 217 nucleotides Pf1N1B4_5577 and Pf1N1B4_5578 are separated by 621 nucleotides
Pf1N1B4_5576 - hypothetical protein, at 346,473 to 346,823
_5576
Pf1N1B4_5577 - twitching motility protein PilG, at 347,041 to 347,319
_5577
Pf1N1B4_5578 - hypothetical protein, at 347,941 to 349,080
_5578
Position (kb) 347
348 Strain fitness (log2 ratio) -2
-1
0
1
2 at 346.058 kb on + strand at 346.059 kb on - strand at 346.059 kb on - strand at 346.060 kb on + strand at 346.060 kb on + strand at 346.060 kb on + strand at 346.060 kb on + strand at 346.060 kb on + strand at 346.060 kb on + strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.162 kb on + strand at 346.162 kb on + strand at 346.163 kb on - strand at 346.171 kb on + strand at 346.171 kb on + strand at 346.171 kb on + strand at 346.172 kb on - strand at 346.202 kb on + strand at 346.231 kb on + strand at 346.257 kb on - strand at 346.351 kb on - strand at 346.351 kb on - strand at 346.664 kb on + strand, within Pf1N1B4_5576 at 346.670 kb on + strand, within Pf1N1B4_5576 at 346.670 kb on + strand, within Pf1N1B4_5576 at 346.671 kb on - strand at 346.767 kb on + strand, within Pf1N1B4_5576 at 346.768 kb on - strand, within Pf1N1B4_5576 at 346.768 kb on - strand, within Pf1N1B4_5576 at 346.768 kb on - strand, within Pf1N1B4_5576 at 346.768 kb on - strand, within Pf1N1B4_5576 at 346.771 kb on - strand, within Pf1N1B4_5576 at 347.051 kb on + strand at 347.052 kb on - strand at 347.052 kb on - strand at 347.102 kb on + strand, within Pf1N1B4_5577 at 347.102 kb on + strand, within Pf1N1B4_5577 at 347.157 kb on + strand, within Pf1N1B4_5577 at 347.157 kb on + strand, within Pf1N1B4_5577 at 347.179 kb on - strand, within Pf1N1B4_5577 at 347.319 kb on + strand at 347.320 kb on - strand at 347.320 kb on - strand at 347.391 kb on + strand at 347.392 kb on - strand at 347.392 kb on - strand at 347.424 kb on + strand at 347.480 kb on + strand at 347.480 kb on + strand at 347.481 kb on - strand at 347.505 kb on + strand at 347.506 kb on - strand at 347.516 kb on - strand at 347.519 kb on + strand at 347.520 kb on - strand at 347.861 kb on - strand at 347.864 kb on + strand at 347.865 kb on - strand at 347.865 kb on - strand at 347.925 kb on + strand at 347.925 kb on + strand at 347.926 kb on - strand at 347.926 kb on - strand at 347.926 kb on - strand at 347.926 kb on - strand at 347.926 kb on - strand at 347.926 kb on - strand at 347.926 kb on - strand at 347.926 kb on - strand at 347.926 kb on - strand at 347.942 kb on + strand at 347.953 kb on + strand at 347.953 kb on + strand at 347.953 kb on + strand at 347.953 kb on + strand at 347.954 kb on - strand at 347.954 kb on - strand at 347.954 kb on - strand at 347.954 kb on - strand at 347.954 kb on - strand at 347.959 kb on + strand at 347.959 kb on + strand at 347.960 kb on - strand at 347.960 kb on - strand at 348.083 kb on + strand, within Pf1N1B4_5578 at 348.092 kb on + strand, within Pf1N1B4_5578
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 346,058 + +0.2 346,059 - +0.8 346,059 - +2.5 346,060 + -1.4 346,060 + +0.7 346,060 + +0.2 346,060 + -2.1 346,060 + +1.8 346,060 + +1.8 346,061 - -0.8 346,061 - +0.8 346,061 - +0.2 346,061 - +0.2 346,061 - +1.2 346,061 - -1.8 346,061 - +0.8 346,061 - +1.2 346,061 - -0.1 346,061 - +1.2 346,061 - -0.4 346,061 - +1.2 346,061 - +0.2 346,162 + +0.2 346,162 + -2.1 346,163 - -0.2 346,171 + -0.4 346,171 + +2.2 346,171 + +1.8 346,172 - +0.2 346,202 + +0.7 346,231 + +0.8 346,257 - -0.3 346,351 - +0.2 346,351 - +1.2 346,664 + Pf1N1B4_5576 0.54 -1.8 346,670 + Pf1N1B4_5576 0.56 -0.8 346,670 + Pf1N1B4_5576 0.56 -0.8 346,671 - +0.2 346,767 + Pf1N1B4_5576 0.84 -1.4 346,768 - Pf1N1B4_5576 0.84 +0.2 346,768 - Pf1N1B4_5576 0.84 +0.2 346,768 - Pf1N1B4_5576 0.84 -1.8 346,768 - Pf1N1B4_5576 0.84 -0.8 346,771 - Pf1N1B4_5576 0.85 -0.4 347,051 + +0.2 347,052 - +1.2 347,052 - +0.8 347,102 + Pf1N1B4_5577 0.22 -1.8 347,102 + Pf1N1B4_5577 0.22 -0.8 347,157 + Pf1N1B4_5577 0.42 +0.5 347,157 + Pf1N1B4_5577 0.42 -1.4 347,179 - Pf1N1B4_5577 0.49 +0.2 347,319 + +0.7 347,320 - -0.2 347,320 - -1.6 347,391 + -0.8 347,392 - -1.4 347,392 - +1.2 347,424 + +2.5 347,480 + -1.4 347,480 + +0.8 347,481 - -0.2 347,505 + +0.2 347,506 - -0.8 347,516 - +1.5 347,519 + +0.6 347,520 - -0.0 347,861 - +0.6 347,864 + +0.6 347,865 - +1.8 347,865 - -0.8 347,925 + +0.2 347,925 + +0.2 347,926 - +1.8 347,926 - +0.2 347,926 - +1.2 347,926 - +0.3 347,926 - +1.0 347,926 - -0.1 347,926 - -1.6 347,926 - +0.9 347,926 - +1.8 347,942 + +0.2 347,953 + -1.4 347,953 + -0.8 347,953 + +0.2 347,953 + +1.4 347,954 - +1.2 347,954 - +1.4 347,954 - +0.2 347,954 - +0.6 347,954 - -1.4 347,959 + +0.3 347,959 + +1.2 347,960 - -0.8 347,960 - +1.8 348,083 + Pf1N1B4_5578 0.12 -1.1 348,092 + Pf1N1B4_5578 0.13 +0.5
Or see this region's nucleotide sequence