Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4518 and Pf1N1B4_4519 are separated by 129 nucleotides Pf1N1B4_4519 and Pf1N1B4_4520 are separated by 40 nucleotides Pf1N1B4_4520 and Pf1N1B4_4521 are separated by 2 nucleotides
Pf1N1B4_4518 - Possible pyrimidine permease in reductive pathway, at 4,981,697 to 4,983,181
_4518
Pf1N1B4_4519 - Beta-ureidopropionase (EC 3.5.1.6), at 4,983,311 to 4,984,594
_4519
Pf1N1B4_4520 - GENE II AND X PROTEINS, at 4,984,635 to 4,985,048
_4520
Pf1N1B4_4521 - Probable transmembrane protein, at 4,985,051 to 4,985,485
_4521
Position (kb)
4983
4984
4985 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4982.400 kb on - strand, within Pf1N1B4_4518 at 4982.748 kb on - strand, within Pf1N1B4_4518 at 4982.748 kb on - strand at 4982.847 kb on + strand, within Pf1N1B4_4518 at 4982.865 kb on - strand, within Pf1N1B4_4518 at 4983.284 kb on - strand at 4983.284 kb on - strand at 4984.146 kb on - strand, within Pf1N1B4_4519 at 4985.265 kb on - strand, within Pf1N1B4_4521 at 4985.269 kb on - strand at 4985.269 kb on - strand, within Pf1N1B4_4521 at 4985.269 kb on - strand, within Pf1N1B4_4521 at 4985.269 kb on - strand, within Pf1N1B4_4521 at 4985.300 kb on + strand, within Pf1N1B4_4521 at 4985.301 kb on - strand, within Pf1N1B4_4521 at 4985.518 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 4,982,400 - Pf1N1B4_4518 0.47 -1.4 4,982,748 - Pf1N1B4_4518 0.71 -0.4 4,982,748 - +0.6 4,982,847 + Pf1N1B4_4518 0.77 -0.4 4,982,865 - Pf1N1B4_4518 0.79 -0.4 4,983,284 - -0.4 4,983,284 - -0.4 4,984,146 - Pf1N1B4_4519 0.65 -0.4 4,985,265 - Pf1N1B4_4521 0.49 -0.4 4,985,269 - -0.4 4,985,269 - Pf1N1B4_4521 0.50 +0.4 4,985,269 - Pf1N1B4_4521 0.50 +0.4 4,985,269 - Pf1N1B4_4521 0.50 +2.0 4,985,300 + Pf1N1B4_4521 0.57 -1.4 4,985,301 - Pf1N1B4_4521 0.57 +0.6 4,985,518 - -1.9
Or see this region's nucleotide sequence