Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS08040 and MMP_RS08045 are separated by 10 nucleotides MMP_RS08045 and MMP_RS08050 are separated by 21 nucleotides MMP_RS08050 and MMP_RS08055 are separated by 16 nucleotides MMP_RS08055 and MMP_RS08060 are separated by 4 nucleotides
MMP_RS08040: MMP_RS08040 - tetrahydromethanopterin S-methyltransferase subunit C, at 1,516,564 to 1,517,352
_RS08040
MMP_RS08045: MMP_RS08045 - tetrahydromethanopterin S-methyltransferase subunit B, at 1,517,363 to 1,517,689
_RS08045
MMP_RS08050: MMP_RS08050 - tetrahydromethanopterin S-methyltransferase subunit A, at 1,517,711 to 1,518,430
_RS08050
MMP_RS08055: MMP_RS08055 - tetrahydromethanopterin S-methyltransferase subunit A, at 1,518,447 to 1,519,208
_RS08055
MMP_RS08060: MMP_RS08060 - tetrahydromethanopterin S-methyltransferase subunit G, at 1,519,213 to 1,519,437
_RS08060
Position (kb)
1517
1518
1519 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1516.763 kb on - strand at 1516.794 kb on + strand at 1516.869 kb on - strand at 1516.972 kb on + strand at 1517.234 kb on - strand at 1517.235 kb on + strand at 1517.270 kb on + strand at 1517.320 kb on + strand at 1517.323 kb on - strand at 1517.324 kb on + strand at 1517.379 kb on - strand at 1517.379 kb on - strand at 1517.410 kb on + strand at 1517.644 kb on + strand at 1518.362 kb on - strand at 1518.391 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 1,516,763 - -2.4 1,516,794 + -3.2 1,516,869 - -2.4 1,516,972 + -2.5 1,517,234 - -2.0 1,517,235 + -1.0 1,517,270 + +0.1 1,517,320 + +0.5 1,517,323 - -0.5 1,517,324 + -3.5 1,517,379 - -1.6 1,517,379 - -1.0 1,517,410 + -2.2 1,517,644 + -0.8 1,518,362 - -3.4 1,518,391 + -1.2
Or see this region's nucleotide sequence