Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07150

Experiment: Formate with hypochlorite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07140 and MMP_RS07145 are separated by 46 nucleotidesMMP_RS07145 and MMP_RS07150 are separated by 45 nucleotidesMMP_RS07150 and MMP_RS07155 are separated by 55 nucleotides MMP_RS07140: MMP_RS07140 - TIGR00341 family protein, at 1,366,033 to 1,367,040 _RS07140 MMP_RS07145: MMP_RS07145 - AmmeMemoRadiSam system protein B, at 1,367,087 to 1,367,941 _RS07145 MMP_RS07150: MMP_RS07150 - MTH895/ArsE family thioredoxin-like protein, at 1,367,987 to 1,368,232 _RS07150 MMP_RS07155: MMP_RS07155 - MFS transporter, at 1,368,288 to 1,369,436 _RS07155 Position (kb) 1367 1368 1369Strain fitness (log2 ratio) -1 0 1at 1366.998 kb on - strandat 1367.009 kb on - strandat 1367.034 kb on + strandat 1367.055 kb on + strandat 1367.069 kb on + strandat 1367.087 kb on + strandat 1367.253 kb on + strand, within MMP_RS07145at 1367.254 kb on - strand, within MMP_RS07145at 1367.255 kb on + strand, within MMP_RS07145at 1367.259 kb on + strand, within MMP_RS07145at 1367.328 kb on - strand, within MMP_RS07145at 1367.435 kb on + strand, within MMP_RS07145at 1367.538 kb on - strand, within MMP_RS07145at 1367.572 kb on - strand, within MMP_RS07145at 1367.572 kb on - strand, within MMP_RS07145at 1367.573 kb on + strand, within MMP_RS07145at 1367.600 kb on + strand, within MMP_RS07145at 1367.612 kb on - strand, within MMP_RS07145at 1367.775 kb on - strand, within MMP_RS07145at 1367.786 kb on + strand, within MMP_RS07145at 1367.788 kb on + strand, within MMP_RS07145at 1367.954 kb on - strandat 1367.967 kb on - strandat 1367.976 kb on + strandat 1368.010 kb on - strandat 1368.056 kb on - strand, within MMP_RS07150at 1368.056 kb on - strand, within MMP_RS07150at 1368.061 kb on - strand, within MMP_RS07150at 1368.061 kb on - strand, within MMP_RS07150at 1368.116 kb on - strand, within MMP_RS07150at 1368.117 kb on + strand, within MMP_RS07150at 1368.219 kb on + strandat 1368.269 kb on - strandat 1368.269 kb on - strandat 1368.270 kb on + strandat 1368.279 kb on + strandat 1368.289 kb on - strandat 1368.368 kb on - strandat 1368.420 kb on - strand, within MMP_RS07155at 1368.422 kb on - strand, within MMP_RS07155at 1368.423 kb on + strand, within MMP_RS07155at 1368.434 kb on - strand, within MMP_RS07155at 1368.473 kb on - strand, within MMP_RS07155at 1368.474 kb on + strand, within MMP_RS07155at 1368.506 kb on - strand, within MMP_RS07155at 1368.551 kb on + strand, within MMP_RS07155at 1368.745 kb on - strand, within MMP_RS07155at 1368.784 kb on + strand, within MMP_RS07155at 1368.923 kb on - strand, within MMP_RS07155at 1368.944 kb on + strand, within MMP_RS07155at 1368.976 kb on + strand, within MMP_RS07155at 1369.018 kb on - strand, within MMP_RS07155

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM
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1,366,998 - -0.1
1,367,009 - -0.3
1,367,034 + +0.3
1,367,055 + -0.2
1,367,069 + -0.0
1,367,087 + +0.4
1,367,253 + MMP_RS07145 0.19 +1.2
1,367,254 - MMP_RS07145 0.20 +0.5
1,367,255 + MMP_RS07145 0.20 -0.2
1,367,259 + MMP_RS07145 0.20 -0.5
1,367,328 - MMP_RS07145 0.28 +0.2
1,367,435 + MMP_RS07145 0.41 +0.3
1,367,538 - MMP_RS07145 0.53 +0.7
1,367,572 - MMP_RS07145 0.57 +0.0
1,367,572 - MMP_RS07145 0.57 -0.9
1,367,573 + MMP_RS07145 0.57 +0.4
1,367,600 + MMP_RS07145 0.60 +0.1
1,367,612 - MMP_RS07145 0.61 -0.1
1,367,775 - MMP_RS07145 0.80 +0.4
1,367,786 + MMP_RS07145 0.82 -0.1
1,367,788 + MMP_RS07145 0.82 +0.5
1,367,954 - +0.3
1,367,967 - +0.3
1,367,976 + +0.5
1,368,010 - +0.4
1,368,056 - MMP_RS07150 0.28 +0.4
1,368,056 - MMP_RS07150 0.28 -0.1
1,368,061 - MMP_RS07150 0.30 +0.4
1,368,061 - MMP_RS07150 0.30 +0.7
1,368,116 - MMP_RS07150 0.52 +0.3
1,368,117 + MMP_RS07150 0.53 +0.1
1,368,219 + +0.4
1,368,269 - -0.1
1,368,269 - +0.3
1,368,270 + +0.2
1,368,279 + +0.6
1,368,289 - +0.2
1,368,368 - +0.2
1,368,420 - MMP_RS07155 0.11 +0.4
1,368,422 - MMP_RS07155 0.12 +0.3
1,368,423 + MMP_RS07155 0.12 +0.1
1,368,434 - MMP_RS07155 0.13 -0.6
1,368,473 - MMP_RS07155 0.16 +0.4
1,368,474 + MMP_RS07155 0.16 +0.4
1,368,506 - MMP_RS07155 0.19 -0.0
1,368,551 + MMP_RS07155 0.23 +0.3
1,368,745 - MMP_RS07155 0.40 +0.4
1,368,784 + MMP_RS07155 0.43 +0.4
1,368,923 - MMP_RS07155 0.55 -1.3
1,368,944 + MMP_RS07155 0.57 +0.4
1,368,976 + MMP_RS07155 0.60 +0.2
1,369,018 - MMP_RS07155 0.64 +0.7

Or see this region's nucleotide sequence