Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06995 and MMP_RS07000 are separated by 15 nucleotides MMP_RS07000 and MMP_RS07005 are separated by 44 nucleotides MMP_RS07005 and MMP_RS07010 are separated by 13 nucleotides
MMP_RS06995: MMP_RS06995 - TIGR00269 family protein, at 1,335,578 to 1,336,513
_RS06995
MMP_RS07000: MMP_RS07000 - MoaD/ThiS family protein, at 1,336,529 to 1,336,783
_RS07000
MMP_RS07005: MMP_RS07005 - 4Fe-4S binding protein, at 1,336,828 to 1,337,226
_RS07005
MMP_RS07010: MMP_RS07010 - homocysteine biosynthesis protein, at 1,337,240 to 1,338,781
_RS07010
Position (kb)
1336
1337
1338 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1336.447 kb on - strand at 1336.448 kb on + strand at 1336.480 kb on + strand at 1336.481 kb on - strand at 1336.517 kb on + strand at 1336.551 kb on - strand at 1336.553 kb on - strand at 1336.553 kb on - strand at 1336.580 kb on - strand at 1336.581 kb on + strand at 1336.622 kb on - strand at 1336.685 kb on - strand at 1336.827 kb on + strand at 1337.128 kb on - strand, within MMP_RS07005 at 1337.405 kb on - strand at 1337.406 kb on + strand at 1337.407 kb on - strand at 1337.407 kb on - strand at 1337.407 kb on - strand at 1337.408 kb on + strand at 1337.409 kb on - strand at 1337.409 kb on - strand at 1337.410 kb on + strand at 1337.410 kb on + strand at 1337.414 kb on + strand at 1337.683 kb on - strand at 1337.835 kb on - strand at 1337.836 kb on + strand at 1338.159 kb on - strand at 1338.159 kb on - strand at 1338.201 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 1,336,447 - -3.5 1,336,448 + -1.2 1,336,480 + -1.1 1,336,481 - -2.0 1,336,517 + -1.4 1,336,551 - -2.4 1,336,553 - -2.5 1,336,553 - -2.2 1,336,580 - -2.6 1,336,581 + -2.4 1,336,622 - -1.5 1,336,685 - -3.4 1,336,827 + -1.8 1,337,128 - MMP_RS07005 0.75 -3.8 1,337,405 - -3.8 1,337,406 + -0.7 1,337,407 - -3.0 1,337,407 - -3.7 1,337,407 - -3.0 1,337,408 + -1.1 1,337,409 - -2.2 1,337,409 - -1.9 1,337,410 + -2.1 1,337,410 + -3.0 1,337,414 + -2.1 1,337,683 - -2.5 1,337,835 - -1.1 1,337,836 + -3.7 1,338,159 - -0.9 1,338,159 - -2.1 1,338,201 + -2.2
Or see this region's nucleotide sequence