Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06305

Experiment: Formate with hypochlorite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06300 and MMP_RS06305 are separated by 115 nucleotidesMMP_RS06305 and MMP_RS06310 are separated by 19 nucleotides MMP_RS06300: MMP_RS06300 - ABC transporter substrate-binding protein, at 1,213,682 to 1,214,446 _RS06300 MMP_RS06305: MMP_RS06305 - transporter substrate-binding domain-containing protein, at 1,214,562 to 1,215,326 _RS06305 MMP_RS06310: MMP_RS06310 - NAD(P)/FAD-dependent oxidoreductase, at 1,215,346 to 1,216,503 _RS06310 Position (kb) 1214 1215 1216Strain fitness (log2 ratio) -1 0 1at 1213.614 kb on + strandat 1213.618 kb on + strandat 1213.628 kb on + strandat 1213.629 kb on - strandat 1213.630 kb on + strandat 1213.640 kb on - strandat 1213.647 kb on - strandat 1213.648 kb on + strandat 1213.651 kb on + strandat 1213.651 kb on + strandat 1213.654 kb on + strandat 1213.708 kb on + strandat 1213.747 kb on - strandat 1213.748 kb on + strandat 1213.779 kb on - strand, within MMP_RS06300at 1213.833 kb on + strand, within MMP_RS06300at 1214.030 kb on - strand, within MMP_RS06300at 1214.030 kb on - strand, within MMP_RS06300at 1214.130 kb on + strand, within MMP_RS06300at 1214.130 kb on + strand, within MMP_RS06300at 1214.187 kb on + strand, within MMP_RS06300at 1214.217 kb on - strand, within MMP_RS06300at 1214.218 kb on + strand, within MMP_RS06300at 1214.220 kb on + strand, within MMP_RS06300at 1214.230 kb on - strand, within MMP_RS06300at 1214.242 kb on + strand, within MMP_RS06300at 1214.539 kb on + strandat 1214.539 kb on + strandat 1214.546 kb on + strandat 1214.678 kb on + strand, within MMP_RS06305at 1214.703 kb on - strand, within MMP_RS06305at 1214.704 kb on + strand, within MMP_RS06305at 1214.847 kb on + strand, within MMP_RS06305at 1215.060 kb on - strand, within MMP_RS06305at 1215.159 kb on + strand, within MMP_RS06305at 1215.175 kb on + strand, within MMP_RS06305at 1215.218 kb on - strand, within MMP_RS06305at 1215.258 kb on + strandat 1215.259 kb on - strandat 1215.484 kb on - strand, within MMP_RS06310at 1215.648 kb on + strand, within MMP_RS06310at 1215.664 kb on - strand, within MMP_RS06310at 1215.895 kb on + strand, within MMP_RS06310at 1215.928 kb on - strand, within MMP_RS06310at 1216.012 kb on + strand, within MMP_RS06310at 1216.100 kb on + strand, within MMP_RS06310at 1216.128 kb on - strand, within MMP_RS06310at 1216.129 kb on + strand, within MMP_RS06310at 1216.192 kb on + strand, within MMP_RS06310

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM
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1,213,614 + -0.3
1,213,618 + +0.2
1,213,628 + +0.5
1,213,629 - +0.4
1,213,630 + -0.0
1,213,640 - +0.4
1,213,647 - +0.1
1,213,648 + -0.1
1,213,651 + +0.7
1,213,651 + +0.2
1,213,654 + -0.1
1,213,708 + -0.6
1,213,747 - +0.4
1,213,748 + +0.5
1,213,779 - MMP_RS06300 0.13 +0.2
1,213,833 + MMP_RS06300 0.20 +0.0
1,214,030 - MMP_RS06300 0.45 +0.6
1,214,030 - MMP_RS06300 0.45 -0.2
1,214,130 + MMP_RS06300 0.59 -0.0
1,214,130 + MMP_RS06300 0.59 +0.4
1,214,187 + MMP_RS06300 0.66 +0.4
1,214,217 - MMP_RS06300 0.70 -0.1
1,214,218 + MMP_RS06300 0.70 +0.8
1,214,220 + MMP_RS06300 0.70 +0.2
1,214,230 - MMP_RS06300 0.72 +0.1
1,214,242 + MMP_RS06300 0.73 +0.6
1,214,539 + -0.2
1,214,539 + +0.4
1,214,546 + -0.1
1,214,678 + MMP_RS06305 0.15 +0.6
1,214,703 - MMP_RS06305 0.18 +0.4
1,214,704 + MMP_RS06305 0.19 +0.3
1,214,847 + MMP_RS06305 0.37 +0.1
1,215,060 - MMP_RS06305 0.65 +0.5
1,215,159 + MMP_RS06305 0.78 -0.1
1,215,175 + MMP_RS06305 0.80 +0.1
1,215,218 - MMP_RS06305 0.86 +0.2
1,215,258 + +0.2
1,215,259 - +0.2
1,215,484 - MMP_RS06310 0.12 -0.9
1,215,648 + MMP_RS06310 0.26 +0.2
1,215,664 - MMP_RS06310 0.27 +0.6
1,215,895 + MMP_RS06310 0.47 +0.1
1,215,928 - MMP_RS06310 0.50 -0.7
1,216,012 + MMP_RS06310 0.58 -1.0
1,216,100 + MMP_RS06310 0.65 +0.2
1,216,128 - MMP_RS06310 0.68 +0.2
1,216,129 + MMP_RS06310 0.68 +0.1
1,216,192 + MMP_RS06310 0.73 +0.5

Or see this region's nucleotide sequence