Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06065

Experiment: Formate with hypochlorite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06060 and MMP_RS06065 are separated by 153 nucleotidesMMP_RS06065 and MMP_RS06070 are separated by 120 nucleotides MMP_RS06060: MMP_RS06060 - hypothetical protein, at 1,157,755 to 1,158,837 _RS06060 MMP_RS06065: MMP_RS06065 - iron ABC transporter substrate-binding protein, at 1,158,991 to 1,160,114 _RS06065 MMP_RS06070: MMP_RS06070 - iron ABC transporter substrate-binding protein, at 1,160,235 to 1,161,356 _RS06070 Position (kb) 1158 1159 1160 1161Strain fitness (log2 ratio) -1 0 1at 1158.077 kb on - strand, within MMP_RS06060at 1158.118 kb on + strand, within MMP_RS06060at 1158.123 kb on - strand, within MMP_RS06060at 1158.124 kb on + strand, within MMP_RS06060at 1158.198 kb on + strand, within MMP_RS06060at 1158.255 kb on - strand, within MMP_RS06060at 1158.255 kb on - strand, within MMP_RS06060at 1158.256 kb on + strand, within MMP_RS06060at 1158.438 kb on - strand, within MMP_RS06060at 1158.503 kb on + strand, within MMP_RS06060at 1158.534 kb on - strand, within MMP_RS06060at 1158.543 kb on + strand, within MMP_RS06060at 1158.544 kb on - strand, within MMP_RS06060at 1158.570 kb on + strand, within MMP_RS06060at 1158.675 kb on - strand, within MMP_RS06060at 1158.683 kb on + strand, within MMP_RS06060at 1158.809 kb on - strandat 1158.809 kb on - strandat 1158.846 kb on - strandat 1159.010 kb on - strandat 1159.160 kb on - strand, within MMP_RS06065at 1159.191 kb on + strand, within MMP_RS06065at 1159.299 kb on + strand, within MMP_RS06065at 1159.331 kb on - strand, within MMP_RS06065at 1159.332 kb on + strand, within MMP_RS06065at 1159.346 kb on + strand, within MMP_RS06065at 1159.360 kb on + strand, within MMP_RS06065at 1159.361 kb on - strand, within MMP_RS06065at 1159.361 kb on - strand, within MMP_RS06065at 1159.362 kb on + strand, within MMP_RS06065at 1159.362 kb on + strand, within MMP_RS06065at 1159.362 kb on + strand, within MMP_RS06065at 1159.381 kb on + strand, within MMP_RS06065at 1159.383 kb on + strand, within MMP_RS06065at 1159.383 kb on + strand, within MMP_RS06065at 1159.390 kb on + strand, within MMP_RS06065at 1159.390 kb on + strand, within MMP_RS06065at 1159.390 kb on + strand, within MMP_RS06065at 1159.390 kb on + strand, within MMP_RS06065at 1159.393 kb on - strand, within MMP_RS06065at 1159.393 kb on - strand, within MMP_RS06065at 1159.393 kb on - strand, within MMP_RS06065at 1159.393 kb on - strand, within MMP_RS06065at 1159.394 kb on + strand, within MMP_RS06065at 1159.394 kb on + strand, within MMP_RS06065at 1159.395 kb on - strand, within MMP_RS06065at 1159.395 kb on - strand, within MMP_RS06065at 1159.395 kb on - strand, within MMP_RS06065at 1159.395 kb on - strand, within MMP_RS06065at 1159.396 kb on + strand, within MMP_RS06065at 1159.408 kb on + strand, within MMP_RS06065at 1159.449 kb on + strand, within MMP_RS06065at 1159.451 kb on - strand, within MMP_RS06065at 1159.454 kb on - strand, within MMP_RS06065at 1159.460 kb on + strand, within MMP_RS06065at 1159.632 kb on - strand, within MMP_RS06065at 1159.634 kb on - strand, within MMP_RS06065at 1159.635 kb on + strand, within MMP_RS06065at 1159.894 kb on - strand, within MMP_RS06065at 1159.895 kb on + strand, within MMP_RS06065at 1159.895 kb on + strand, within MMP_RS06065at 1159.895 kb on + strand, within MMP_RS06065at 1159.896 kb on - strand, within MMP_RS06065at 1159.897 kb on + strand, within MMP_RS06065at 1159.918 kb on + strand, within MMP_RS06065at 1159.920 kb on - strand, within MMP_RS06065at 1159.926 kb on + strand, within MMP_RS06065at 1159.959 kb on - strand, within MMP_RS06065at 1159.959 kb on - strand, within MMP_RS06065at 1159.960 kb on + strand, within MMP_RS06065at 1159.960 kb on + strand, within MMP_RS06065at 1159.960 kb on + strand, within MMP_RS06065at 1160.000 kb on + strand, within MMP_RS06065at 1160.026 kb on - strandat 1160.027 kb on + strandat 1160.165 kb on + strandat 1160.170 kb on - strandat 1160.171 kb on + strandat 1160.171 kb on + strandat 1160.185 kb on + strandat 1160.232 kb on + strandat 1160.270 kb on - strandat 1160.271 kb on + strandat 1160.336 kb on - strandat 1160.339 kb on - strandat 1160.340 kb on + strandat 1160.340 kb on + strandat 1160.361 kb on + strand, within MMP_RS06070at 1160.361 kb on + strand, within MMP_RS06070at 1160.443 kb on + strand, within MMP_RS06070at 1160.464 kb on - strand, within MMP_RS06070at 1160.464 kb on - strand, within MMP_RS06070at 1160.490 kb on + strand, within MMP_RS06070at 1160.498 kb on - strand, within MMP_RS06070at 1160.500 kb on - strand, within MMP_RS06070at 1160.548 kb on - strand, within MMP_RS06070at 1160.574 kb on + strand, within MMP_RS06070at 1160.602 kb on - strand, within MMP_RS06070at 1160.612 kb on + strand, within MMP_RS06070at 1160.612 kb on + strand, within MMP_RS06070at 1160.612 kb on + strand, within MMP_RS06070at 1160.624 kb on + strand, within MMP_RS06070at 1160.627 kb on + strand, within MMP_RS06070at 1160.637 kb on - strand, within MMP_RS06070at 1160.637 kb on - strand, within MMP_RS06070at 1160.637 kb on - strand, within MMP_RS06070at 1160.637 kb on - strand, within MMP_RS06070at 1160.638 kb on + strand, within MMP_RS06070at 1160.641 kb on - strand, within MMP_RS06070at 1160.641 kb on - strand, within MMP_RS06070at 1160.642 kb on + strand, within MMP_RS06070at 1160.642 kb on + strand, within MMP_RS06070at 1160.642 kb on + strand, within MMP_RS06070at 1160.808 kb on + strand, within MMP_RS06070at 1160.810 kb on + strand, within MMP_RS06070at 1160.994 kb on + strand, within MMP_RS06070

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM
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1,158,077 - MMP_RS06060 0.30 -0.9
1,158,118 + MMP_RS06060 0.34 -0.2
1,158,123 - MMP_RS06060 0.34 +0.9
1,158,124 + MMP_RS06060 0.34 +0.4
1,158,198 + MMP_RS06060 0.41 +0.6
1,158,255 - MMP_RS06060 0.46 +1.0
1,158,255 - MMP_RS06060 0.46 +0.0
1,158,256 + MMP_RS06060 0.46 +0.5
1,158,438 - MMP_RS06060 0.63 -0.1
1,158,503 + MMP_RS06060 0.69 -0.1
1,158,534 - MMP_RS06060 0.72 +0.2
1,158,543 + MMP_RS06060 0.73 +0.2
1,158,544 - MMP_RS06060 0.73 -0.2
1,158,570 + MMP_RS06060 0.75 -0.1
1,158,675 - MMP_RS06060 0.85 -0.3
1,158,683 + MMP_RS06060 0.86 -0.2
1,158,809 - +0.0
1,158,809 - -0.5
1,158,846 - -0.0
1,159,010 - +0.7
1,159,160 - MMP_RS06065 0.15 +0.2
1,159,191 + MMP_RS06065 0.18 +0.2
1,159,299 + MMP_RS06065 0.27 -0.5
1,159,331 - MMP_RS06065 0.30 +0.5
1,159,332 + MMP_RS06065 0.30 -0.0
1,159,346 + MMP_RS06065 0.32 +0.2
1,159,360 + MMP_RS06065 0.33 +0.6
1,159,361 - MMP_RS06065 0.33 +1.1
1,159,361 - MMP_RS06065 0.33 +0.3
1,159,362 + MMP_RS06065 0.33 +0.3
1,159,362 + MMP_RS06065 0.33 +0.3
1,159,362 + MMP_RS06065 0.33 +0.0
1,159,381 + MMP_RS06065 0.35 -0.3
1,159,383 + MMP_RS06065 0.35 -0.1
1,159,383 + MMP_RS06065 0.35 -0.6
1,159,390 + MMP_RS06065 0.35 -0.2
1,159,390 + MMP_RS06065 0.35 -0.0
1,159,390 + MMP_RS06065 0.35 +0.3
1,159,390 + MMP_RS06065 0.35 +0.1
1,159,393 - MMP_RS06065 0.36 -0.5
1,159,393 - MMP_RS06065 0.36 -0.0
1,159,393 - MMP_RS06065 0.36 +0.5
1,159,393 - MMP_RS06065 0.36 +0.7
1,159,394 + MMP_RS06065 0.36 +0.4
1,159,394 + MMP_RS06065 0.36 -0.6
1,159,395 - MMP_RS06065 0.36 +0.7
1,159,395 - MMP_RS06065 0.36 +0.6
1,159,395 - MMP_RS06065 0.36 -0.6
1,159,395 - MMP_RS06065 0.36 +0.7
1,159,396 + MMP_RS06065 0.36 +0.3
1,159,408 + MMP_RS06065 0.37 +0.6
1,159,449 + MMP_RS06065 0.41 +0.2
1,159,451 - MMP_RS06065 0.41 +0.5
1,159,454 - MMP_RS06065 0.41 +0.1
1,159,460 + MMP_RS06065 0.42 +0.6
1,159,632 - MMP_RS06065 0.57 +0.5
1,159,634 - MMP_RS06065 0.57 +0.6
1,159,635 + MMP_RS06065 0.57 -1.1
1,159,894 - MMP_RS06065 0.80 -0.0
1,159,895 + MMP_RS06065 0.80 +0.5
1,159,895 + MMP_RS06065 0.80 -0.4
1,159,895 + MMP_RS06065 0.80 -0.1
1,159,896 - MMP_RS06065 0.81 +0.6
1,159,897 + MMP_RS06065 0.81 +0.3
1,159,918 + MMP_RS06065 0.82 +0.6
1,159,920 - MMP_RS06065 0.83 -0.3
1,159,926 + MMP_RS06065 0.83 +0.3
1,159,959 - MMP_RS06065 0.86 +0.1
1,159,959 - MMP_RS06065 0.86 +0.2
1,159,960 + MMP_RS06065 0.86 +0.5
1,159,960 + MMP_RS06065 0.86 +0.8
1,159,960 + MMP_RS06065 0.86 +0.4
1,160,000 + MMP_RS06065 0.90 +0.8
1,160,026 - +0.2
1,160,027 + -0.1
1,160,165 + +0.8
1,160,170 - -0.1
1,160,171 + +0.3
1,160,171 + +0.1
1,160,185 + +0.5
1,160,232 + +0.7
1,160,270 - +0.3
1,160,271 + -0.2
1,160,336 - -1.1
1,160,339 - +0.2
1,160,340 + +0.4
1,160,340 + +0.3
1,160,361 + MMP_RS06070 0.11 -0.1
1,160,361 + MMP_RS06070 0.11 -0.4
1,160,443 + MMP_RS06070 0.19 -0.2
1,160,464 - MMP_RS06070 0.20 -0.4
1,160,464 - MMP_RS06070 0.20 +0.2
1,160,490 + MMP_RS06070 0.23 -0.5
1,160,498 - MMP_RS06070 0.23 -0.1
1,160,500 - MMP_RS06070 0.24 -0.9
1,160,548 - MMP_RS06070 0.28 +0.1
1,160,574 + MMP_RS06070 0.30 -0.0
1,160,602 - MMP_RS06070 0.33 -0.0
1,160,612 + MMP_RS06070 0.34 +0.5
1,160,612 + MMP_RS06070 0.34 -0.0
1,160,612 + MMP_RS06070 0.34 -0.0
1,160,624 + MMP_RS06070 0.35 -0.5
1,160,627 + MMP_RS06070 0.35 -0.1
1,160,637 - MMP_RS06070 0.36 +0.3
1,160,637 - MMP_RS06070 0.36 +0.2
1,160,637 - MMP_RS06070 0.36 -0.9
1,160,637 - MMP_RS06070 0.36 +0.2
1,160,638 + MMP_RS06070 0.36 -0.3
1,160,641 - MMP_RS06070 0.36 +0.2
1,160,641 - MMP_RS06070 0.36 -0.4
1,160,642 + MMP_RS06070 0.36 +0.3
1,160,642 + MMP_RS06070 0.36 +0.1
1,160,642 + MMP_RS06070 0.36 +0.3
1,160,808 + MMP_RS06070 0.51 +0.4
1,160,810 + MMP_RS06070 0.51 +0.6
1,160,994 + MMP_RS06070 0.68 +0.5

Or see this region's nucleotide sequence