Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05275 and MMP_RS05280 are separated by 160 nucleotides MMP_RS05280 and MMP_RS05285 overlap by 8 nucleotides
MMP_RS05275: MMP_RS05275 - AI-2E family transporter, at 1,008,301 to 1,009,266
_RS05275
MMP_RS05280: MMP_RS05280 - COG1361 S-layer family protein, at 1,009,427 to 1,010,998
_RS05280
MMP_RS05285: MMP_RS05285 - MMPL family transporter, at 1,010,991 to 1,012,157
_RS05285
Position (kb)
1009
1010
1011 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1008.560 kb on - strand, within MMP_RS05275 at 1008.561 kb on + strand, within MMP_RS05275 at 1008.565 kb on - strand, within MMP_RS05275 at 1008.565 kb on - strand, within MMP_RS05275 at 1008.565 kb on - strand, within MMP_RS05275 at 1008.581 kb on - strand, within MMP_RS05275 at 1008.582 kb on + strand, within MMP_RS05275 at 1008.582 kb on + strand, within MMP_RS05275 at 1008.582 kb on + strand, within MMP_RS05275 at 1008.620 kb on + strand, within MMP_RS05275 at 1008.642 kb on - strand, within MMP_RS05275 at 1008.771 kb on - strand, within MMP_RS05275 at 1008.797 kb on - strand, within MMP_RS05275 at 1008.810 kb on - strand, within MMP_RS05275 at 1008.979 kb on - strand, within MMP_RS05275 at 1009.029 kb on - strand, within MMP_RS05275 at 1009.052 kb on + strand, within MMP_RS05275 at 1009.060 kb on - strand, within MMP_RS05275 at 1009.093 kb on - strand, within MMP_RS05275 at 1009.213 kb on + strand at 1009.366 kb on - strand at 1009.372 kb on - strand at 1009.373 kb on + strand at 1009.471 kb on + strand at 1009.475 kb on + strand at 1009.475 kb on + strand at 1009.475 kb on + strand at 1009.477 kb on + strand at 1009.480 kb on + strand at 1009.485 kb on + strand at 1009.511 kb on - strand at 1009.516 kb on + strand at 1009.555 kb on - strand at 1009.575 kb on - strand at 1009.575 kb on - strand at 1009.615 kb on - strand, within MMP_RS05280 at 1009.627 kb on - strand, within MMP_RS05280 at 1009.851 kb on - strand, within MMP_RS05280 at 1009.934 kb on - strand, within MMP_RS05280 at 1009.935 kb on + strand, within MMP_RS05280 at 1009.937 kb on + strand, within MMP_RS05280 at 1009.995 kb on + strand, within MMP_RS05280 at 1010.005 kb on + strand, within MMP_RS05280 at 1010.250 kb on + strand, within MMP_RS05280 at 1010.313 kb on + strand, within MMP_RS05280 at 1010.316 kb on - strand, within MMP_RS05280 at 1010.316 kb on - strand, within MMP_RS05280 at 1010.491 kb on - strand, within MMP_RS05280 at 1010.575 kb on - strand, within MMP_RS05280 at 1010.577 kb on - strand, within MMP_RS05280 at 1010.577 kb on - strand, within MMP_RS05280 at 1010.592 kb on - strand, within MMP_RS05280 at 1010.709 kb on - strand, within MMP_RS05280 at 1010.736 kb on + strand, within MMP_RS05280 at 1010.781 kb on + strand, within MMP_RS05280 at 1010.810 kb on - strand, within MMP_RS05280 at 1010.816 kb on - strand, within MMP_RS05280 at 1011.228 kb on - strand, within MMP_RS05285 at 1011.228 kb on - strand, within MMP_RS05285 at 1011.243 kb on - strand, within MMP_RS05285 at 1011.328 kb on + strand, within MMP_RS05285 at 1011.460 kb on - strand, within MMP_RS05285 at 1011.469 kb on + strand, within MMP_RS05285 at 1011.670 kb on - strand, within MMP_RS05285 at 1011.747 kb on - strand, within MMP_RS05285 at 1011.784 kb on - strand, within MMP_RS05285 at 1011.784 kb on - strand, within MMP_RS05285 at 1011.785 kb on + strand, within MMP_RS05285 at 1011.828 kb on + strand, within MMP_RS05285 at 1011.944 kb on - strand, within MMP_RS05285
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 1,008,560 - MMP_RS05275 0.27 -0.5 1,008,561 + MMP_RS05275 0.27 -0.1 1,008,565 - MMP_RS05275 0.27 -0.3 1,008,565 - MMP_RS05275 0.27 -0.1 1,008,565 - MMP_RS05275 0.27 +0.6 1,008,581 - MMP_RS05275 0.29 +0.1 1,008,582 + MMP_RS05275 0.29 +0.2 1,008,582 + MMP_RS05275 0.29 +0.1 1,008,582 + MMP_RS05275 0.29 +0.1 1,008,620 + MMP_RS05275 0.33 +0.6 1,008,642 - MMP_RS05275 0.35 -0.1 1,008,771 - MMP_RS05275 0.49 -0.5 1,008,797 - MMP_RS05275 0.51 +0.2 1,008,810 - MMP_RS05275 0.53 -0.3 1,008,979 - MMP_RS05275 0.70 -0.3 1,009,029 - MMP_RS05275 0.75 +0.2 1,009,052 + MMP_RS05275 0.78 +0.1 1,009,060 - MMP_RS05275 0.79 +0.7 1,009,093 - MMP_RS05275 0.82 +0.3 1,009,213 + +0.0 1,009,366 - -1.9 1,009,372 - -0.3 1,009,373 + +0.0 1,009,471 + -0.8 1,009,475 + +0.4 1,009,475 + -0.1 1,009,475 + +0.4 1,009,477 + -0.6 1,009,480 + -1.5 1,009,485 + +0.3 1,009,511 - -0.8 1,009,516 + -0.9 1,009,555 - -0.1 1,009,575 - -1.6 1,009,575 - -0.5 1,009,615 - MMP_RS05280 0.12 -2.0 1,009,627 - MMP_RS05280 0.13 -1.8 1,009,851 - MMP_RS05280 0.27 -0.9 1,009,934 - MMP_RS05280 0.32 -1.0 1,009,935 + MMP_RS05280 0.32 -1.5 1,009,937 + MMP_RS05280 0.32 -1.2 1,009,995 + MMP_RS05280 0.36 -3.7 1,010,005 + MMP_RS05280 0.37 -1.3 1,010,250 + MMP_RS05280 0.52 -0.3 1,010,313 + MMP_RS05280 0.56 -0.5 1,010,316 - MMP_RS05280 0.57 -0.7 1,010,316 - MMP_RS05280 0.57 -1.0 1,010,491 - MMP_RS05280 0.68 -0.6 1,010,575 - MMP_RS05280 0.73 -1.0 1,010,577 - MMP_RS05280 0.73 -1.9 1,010,577 - MMP_RS05280 0.73 -0.8 1,010,592 - MMP_RS05280 0.74 -0.6 1,010,709 - MMP_RS05280 0.82 -1.9 1,010,736 + MMP_RS05280 0.83 -1.2 1,010,781 + MMP_RS05280 0.86 -1.1 1,010,810 - MMP_RS05280 0.88 -1.2 1,010,816 - MMP_RS05280 0.88 -1.2 1,011,228 - MMP_RS05285 0.20 -0.9 1,011,228 - MMP_RS05285 0.20 -1.7 1,011,243 - MMP_RS05285 0.22 -3.8 1,011,328 + MMP_RS05285 0.29 +0.6 1,011,460 - MMP_RS05285 0.40 -0.3 1,011,469 + MMP_RS05285 0.41 -1.5 1,011,670 - MMP_RS05285 0.58 +0.5 1,011,747 - MMP_RS05285 0.65 -0.7 1,011,784 - MMP_RS05285 0.68 -1.7 1,011,784 - MMP_RS05285 0.68 -0.5 1,011,785 + MMP_RS05285 0.68 -1.9 1,011,828 + MMP_RS05285 0.72 -0.9 1,011,944 - MMP_RS05285 0.82 -1.2
Or see this region's nucleotide sequence