Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04825 and MMP_RS04830 are separated by 70 nucleotides MMP_RS04830 and MMP_RS04835 are separated by 20 nucleotides MMP_RS04835 and MMP_RS04840 are separated by 15 nucleotides MMP_RS04840 and MMP_RS04845 are separated by 84 nucleotides
MMP_RS04825: MMP_RS04825 - protein-glutamate O-methyltransferase CheR, at 919,439 to 920,251
_RS04825
MMP_RS04830: MMP_RS04830 - chemotaxis protein CheC, at 920,322 to 920,930
_RS04830
MMP_RS04835: MMP_RS04835 - chemotaxis protein CheC, at 920,951 to 921,640
_RS04835
MMP_RS04840: MMP_RS04840 - response regulator, at 921,656 to 922,027
_RS04840
MMP_RS04845: MMP_RS04845 - CheF family chemotaxis protein, at 922,112 to 923,158
_RS04845
Position (kb) 920
921
922 Strain fitness (log2 ratio) -1
0
1 at 919.972 kb on - strand, within MMP_RS04825 at 919.980 kb on + strand, within MMP_RS04825 at 920.014 kb on + strand, within MMP_RS04825 at 920.048 kb on - strand, within MMP_RS04825 at 920.048 kb on - strand, within MMP_RS04825 at 920.054 kb on + strand, within MMP_RS04825 at 920.060 kb on + strand, within MMP_RS04825 at 920.101 kb on + strand, within MMP_RS04825 at 920.101 kb on + strand, within MMP_RS04825 at 920.109 kb on - strand, within MMP_RS04825 at 920.109 kb on - strand, within MMP_RS04825 at 920.162 kb on - strand, within MMP_RS04825 at 920.169 kb on - strand, within MMP_RS04825 at 920.169 kb on - strand, within MMP_RS04825 at 920.170 kb on + strand at 920.170 kb on + strand at 920.173 kb on - strand at 920.173 kb on - strand at 920.173 kb on - strand at 920.174 kb on + strand at 920.174 kb on + strand at 920.174 kb on + strand at 920.196 kb on + strand at 920.201 kb on - strand at 920.225 kb on + strand at 920.238 kb on - strand at 920.238 kb on - strand at 920.242 kb on - strand at 920.243 kb on + strand at 920.243 kb on + strand at 920.243 kb on + strand at 920.266 kb on - strand at 920.266 kb on - strand at 920.266 kb on - strand at 920.266 kb on - strand at 920.267 kb on + strand at 920.267 kb on + strand at 920.294 kb on + strand at 920.316 kb on - strand at 920.319 kb on - strand at 920.319 kb on - strand at 920.323 kb on - strand at 920.358 kb on - strand at 920.359 kb on + strand at 920.359 kb on + strand at 920.359 kb on + strand at 920.402 kb on - strand, within MMP_RS04830 at 920.402 kb on - strand, within MMP_RS04830 at 920.403 kb on + strand, within MMP_RS04830 at 920.406 kb on - strand, within MMP_RS04830 at 920.406 kb on - strand, within MMP_RS04830 at 920.407 kb on + strand, within MMP_RS04830 at 920.411 kb on - strand, within MMP_RS04830 at 920.429 kb on - strand, within MMP_RS04830 at 920.430 kb on + strand, within MMP_RS04830 at 920.444 kb on - strand, within MMP_RS04830 at 920.478 kb on + strand, within MMP_RS04830 at 920.478 kb on + strand, within MMP_RS04830 at 920.478 kb on + strand, within MMP_RS04830 at 920.480 kb on - strand, within MMP_RS04830 at 920.480 kb on - strand, within MMP_RS04830 at 920.514 kb on - strand, within MMP_RS04830 at 920.515 kb on + strand, within MMP_RS04830 at 920.532 kb on - strand, within MMP_RS04830 at 920.533 kb on + strand, within MMP_RS04830 at 920.547 kb on - strand, within MMP_RS04830 at 920.653 kb on + strand, within MMP_RS04830 at 920.791 kb on - strand, within MMP_RS04830 at 920.791 kb on - strand, within MMP_RS04830 at 920.792 kb on + strand, within MMP_RS04830 at 920.810 kb on - strand, within MMP_RS04830 at 920.819 kb on - strand, within MMP_RS04830 at 920.847 kb on + strand, within MMP_RS04830 at 920.906 kb on - strand at 920.907 kb on + strand at 920.910 kb on - strand at 920.934 kb on + strand at 920.996 kb on - strand at 921.005 kb on - strand at 921.006 kb on + strand at 921.055 kb on - strand, within MMP_RS04835 at 921.107 kb on - strand, within MMP_RS04835 at 921.107 kb on - strand, within MMP_RS04835 at 921.160 kb on - strand, within MMP_RS04835 at 921.161 kb on + strand, within MMP_RS04835 at 921.167 kb on + strand, within MMP_RS04835 at 921.383 kb on + strand, within MMP_RS04835 at 921.408 kb on + strand, within MMP_RS04835 at 921.408 kb on + strand, within MMP_RS04835 at 921.434 kb on - strand, within MMP_RS04835 at 921.543 kb on + strand, within MMP_RS04835 at 921.643 kb on - strand at 921.710 kb on - strand, within MMP_RS04840 at 921.711 kb on + strand, within MMP_RS04840 at 921.715 kb on - strand, within MMP_RS04840 at 921.715 kb on - strand, within MMP_RS04840 at 921.716 kb on + strand, within MMP_RS04840 at 921.716 kb on + strand, within MMP_RS04840 at 921.717 kb on - strand, within MMP_RS04840 at 921.718 kb on + strand, within MMP_RS04840 at 921.718 kb on + strand, within MMP_RS04840 at 921.737 kb on - strand, within MMP_RS04840 at 921.738 kb on + strand, within MMP_RS04840 at 921.776 kb on + strand, within MMP_RS04840 at 921.783 kb on + strand, within MMP_RS04840 at 921.783 kb on + strand, within MMP_RS04840 at 921.785 kb on - strand, within MMP_RS04840 at 921.898 kb on - strand, within MMP_RS04840 at 921.940 kb on + strand, within MMP_RS04840 at 921.998 kb on - strand at 921.999 kb on + strand at 922.031 kb on - strand at 922.032 kb on + strand at 922.032 kb on + strand at 922.046 kb on + strand at 922.063 kb on - strand at 922.063 kb on - strand at 922.074 kb on - strand at 922.077 kb on - strand at 922.077 kb on - strand at 922.077 kb on - strand at 922.078 kb on + strand at 922.080 kb on - strand at 922.086 kb on - strand at 922.097 kb on - strand at 922.097 kb on - strand at 922.097 kb on - strand at 922.097 kb on - strand at 922.098 kb on + strand at 922.098 kb on + strand at 922.098 kb on + strand at 922.098 kb on + strand at 922.101 kb on - strand at 922.102 kb on + strand at 922.108 kb on - strand at 922.109 kb on + strand at 922.109 kb on + strand at 922.109 kb on + strand at 922.124 kb on + strand at 922.124 kb on + strand at 922.127 kb on + strand at 922.129 kb on - strand at 922.138 kb on - strand at 922.139 kb on + strand at 922.139 kb on + strand at 922.177 kb on - strand at 922.184 kb on + strand at 922.258 kb on - strand, within MMP_RS04845 at 922.290 kb on - strand, within MMP_RS04845 at 922.292 kb on - strand, within MMP_RS04845 at 922.469 kb on - strand, within MMP_RS04845 at 922.570 kb on - strand, within MMP_RS04845 at 922.601 kb on + strand, within MMP_RS04845 at 922.637 kb on - strand, within MMP_RS04845
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 919,972 - MMP_RS04825 0.66 -0.2 919,980 + MMP_RS04825 0.67 -0.5 920,014 + MMP_RS04825 0.71 +1.0 920,048 - MMP_RS04825 0.75 +0.7 920,048 - MMP_RS04825 0.75 -0.0 920,054 + MMP_RS04825 0.76 +0.1 920,060 + MMP_RS04825 0.76 +0.3 920,101 + MMP_RS04825 0.81 +0.3 920,101 + MMP_RS04825 0.81 +0.5 920,109 - MMP_RS04825 0.82 +0.4 920,109 - MMP_RS04825 0.82 -0.1 920,162 - MMP_RS04825 0.89 +0.2 920,169 - MMP_RS04825 0.90 +0.3 920,169 - MMP_RS04825 0.90 -0.1 920,170 + +0.0 920,170 + -0.7 920,173 - +0.4 920,173 - +0.1 920,173 - +0.5 920,174 + +0.1 920,174 + +0.9 920,174 + +0.0 920,196 + -0.2 920,201 - +0.3 920,225 + -0.7 920,238 - +0.6 920,238 - -0.0 920,242 - +0.3 920,243 + -1.2 920,243 + +0.4 920,243 + +0.9 920,266 - +0.1 920,266 - +0.4 920,266 - +0.4 920,266 - -0.3 920,267 + -0.5 920,267 + -0.3 920,294 + -0.3 920,316 - +0.3 920,319 - +0.4 920,319 - -1.2 920,323 - -0.5 920,358 - -0.1 920,359 + +0.1 920,359 + -0.4 920,359 + -0.2 920,402 - MMP_RS04830 0.13 +0.2 920,402 - MMP_RS04830 0.13 +0.4 920,403 + MMP_RS04830 0.13 -0.6 920,406 - MMP_RS04830 0.14 +0.1 920,406 - MMP_RS04830 0.14 -0.6 920,407 + MMP_RS04830 0.14 +0.1 920,411 - MMP_RS04830 0.15 +0.6 920,429 - MMP_RS04830 0.18 +0.4 920,430 + MMP_RS04830 0.18 -0.5 920,444 - MMP_RS04830 0.20 -0.1 920,478 + MMP_RS04830 0.26 -0.5 920,478 + MMP_RS04830 0.26 +0.0 920,478 + MMP_RS04830 0.26 +0.0 920,480 - MMP_RS04830 0.26 -0.2 920,480 - MMP_RS04830 0.26 +0.2 920,514 - MMP_RS04830 0.32 +0.2 920,515 + MMP_RS04830 0.32 +0.5 920,532 - MMP_RS04830 0.34 -0.5 920,533 + MMP_RS04830 0.35 -0.2 920,547 - MMP_RS04830 0.37 -0.1 920,653 + MMP_RS04830 0.54 -0.2 920,791 - MMP_RS04830 0.77 -0.0 920,791 - MMP_RS04830 0.77 +0.2 920,792 + MMP_RS04830 0.77 +0.0 920,810 - MMP_RS04830 0.80 +0.3 920,819 - MMP_RS04830 0.82 -0.1 920,847 + MMP_RS04830 0.86 -0.3 920,906 - +0.8 920,907 + +0.3 920,910 - +0.9 920,934 + +0.3 920,996 - +0.5 921,005 - -0.6 921,006 + -0.4 921,055 - MMP_RS04835 0.15 +1.0 921,107 - MMP_RS04835 0.23 +0.0 921,107 - MMP_RS04835 0.23 +0.3 921,160 - MMP_RS04835 0.30 +0.3 921,161 + MMP_RS04835 0.30 -0.4 921,167 + MMP_RS04835 0.31 +0.4 921,383 + MMP_RS04835 0.63 +0.4 921,408 + MMP_RS04835 0.66 +0.4 921,408 + MMP_RS04835 0.66 -0.4 921,434 - MMP_RS04835 0.70 +0.3 921,543 + MMP_RS04835 0.86 +0.3 921,643 - +0.0 921,710 - MMP_RS04840 0.15 -1.0 921,711 + MMP_RS04840 0.15 +1.2 921,715 - MMP_RS04840 0.16 -0.2 921,715 - MMP_RS04840 0.16 +0.3 921,716 + MMP_RS04840 0.16 -0.7 921,716 + MMP_RS04840 0.16 +0.1 921,717 - MMP_RS04840 0.16 -0.6 921,718 + MMP_RS04840 0.17 +0.4 921,718 + MMP_RS04840 0.17 -0.1 921,737 - MMP_RS04840 0.22 -0.3 921,738 + MMP_RS04840 0.22 +0.8 921,776 + MMP_RS04840 0.32 -0.0 921,783 + MMP_RS04840 0.34 +0.0 921,783 + MMP_RS04840 0.34 +0.4 921,785 - MMP_RS04840 0.35 +0.0 921,898 - MMP_RS04840 0.65 -0.3 921,940 + MMP_RS04840 0.76 -0.0 921,998 - -0.0 921,999 + +0.2 922,031 - +0.6 922,032 + +0.1 922,032 + +0.1 922,046 + +0.2 922,063 - -0.3 922,063 - -0.5 922,074 - +0.1 922,077 - -0.2 922,077 - +0.1 922,077 - +0.1 922,078 + +0.2 922,080 - -0.5 922,086 - -0.2 922,097 - +0.2 922,097 - +0.0 922,097 - -1.3 922,097 - +0.4 922,098 + -0.8 922,098 + -0.3 922,098 + -0.3 922,098 + -1.6 922,101 - -0.1 922,102 + +0.7 922,108 - -0.5 922,109 + -0.8 922,109 + -0.1 922,109 + +0.3 922,124 + +0.4 922,124 + -0.8 922,127 + +0.2 922,129 - +0.4 922,138 - -0.1 922,139 + -0.5 922,139 + -0.5 922,177 - +0.2 922,184 + -0.3 922,258 - MMP_RS04845 0.14 +0.6 922,290 - MMP_RS04845 0.17 +0.2 922,292 - MMP_RS04845 0.17 -0.1 922,469 - MMP_RS04845 0.34 +0.1 922,570 - MMP_RS04845 0.44 -0.0 922,601 + MMP_RS04845 0.47 -0.6 922,637 - MMP_RS04845 0.50 +0.5
Or see this region's nucleotide sequence