Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04800

Experiment: Formate with hypochlorite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04790 and MMP_RS04795 are separated by 8 nucleotidesMMP_RS04795 and MMP_RS04800 are separated by 10 nucleotidesMMP_RS04800 and MMP_RS04805 are separated by 44 nucleotides MMP_RS04790: MMP_RS04790 - 4-hydroxy-tetrahydrodipicolinate reductase, at 911,732 to 912,544 _RS04790 MMP_RS04795: MMP_RS04795 - tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY, at 912,553 to 913,155 _RS04795 MMP_RS04800: MMP_RS04800 - chemotaxis protein CheW, at 913,166 to 913,609 _RS04800 MMP_RS04805: MMP_RS04805 - chemotaxis response regulator protein-glutamate methylesterase, at 913,654 to 914,751 _RS04805 Position (kb) 913 914Strain fitness (log2 ratio) -3 -2 -1 0 1at 912.249 kb on - strand, within MMP_RS04790at 912.249 kb on - strand, within MMP_RS04790at 912.297 kb on - strand, within MMP_RS04790at 912.297 kb on - strand, within MMP_RS04790at 912.298 kb on + strand, within MMP_RS04790at 912.302 kb on - strand, within MMP_RS04790at 912.303 kb on + strand, within MMP_RS04790at 912.360 kb on - strand, within MMP_RS04790at 912.360 kb on - strand, within MMP_RS04790at 912.361 kb on + strand, within MMP_RS04790at 912.393 kb on - strand, within MMP_RS04790at 912.434 kb on + strand, within MMP_RS04790at 912.508 kb on - strandat 912.571 kb on + strandat 912.609 kb on + strandat 912.688 kb on + strand, within MMP_RS04795at 912.721 kb on - strand, within MMP_RS04795at 912.722 kb on + strand, within MMP_RS04795at 912.722 kb on + strand, within MMP_RS04795at 912.722 kb on + strand, within MMP_RS04795at 912.722 kb on + strand, within MMP_RS04795at 912.859 kb on + strand, within MMP_RS04795at 912.871 kb on - strand, within MMP_RS04795at 912.901 kb on + strand, within MMP_RS04795at 912.937 kb on - strand, within MMP_RS04795at 912.978 kb on - strand, within MMP_RS04795at 913.119 kb on + strandat 913.132 kb on + strandat 913.135 kb on + strandat 913.135 kb on + strandat 913.136 kb on - strandat 913.136 kb on - strandat 913.137 kb on + strandat 913.139 kb on - strandat 913.221 kb on - strand, within MMP_RS04800at 913.248 kb on - strand, within MMP_RS04800at 913.289 kb on - strand, within MMP_RS04800at 913.290 kb on + strand, within MMP_RS04800at 913.290 kb on + strand, within MMP_RS04800at 913.290 kb on + strand, within MMP_RS04800at 913.304 kb on + strand, within MMP_RS04800at 913.342 kb on + strand, within MMP_RS04800at 913.342 kb on - strand, within MMP_RS04800at 913.401 kb on - strand, within MMP_RS04800at 913.401 kb on - strand, within MMP_RS04800at 913.438 kb on + strand, within MMP_RS04800at 913.462 kb on + strand, within MMP_RS04800at 913.555 kb on - strand, within MMP_RS04800at 913.608 kb on + strandat 913.630 kb on - strandat 913.630 kb on - strandat 913.631 kb on + strandat 913.673 kb on - strandat 913.680 kb on + strandat 913.808 kb on - strand, within MMP_RS04805at 913.809 kb on + strand, within MMP_RS04805at 913.813 kb on + strand, within MMP_RS04805at 913.854 kb on - strand, within MMP_RS04805at 913.889 kb on - strand, within MMP_RS04805at 914.001 kb on - strand, within MMP_RS04805at 914.057 kb on - strand, within MMP_RS04805at 914.183 kb on - strand, within MMP_RS04805at 914.187 kb on + strand, within MMP_RS04805at 914.190 kb on + strand, within MMP_RS04805at 914.190 kb on + strand, within MMP_RS04805at 914.190 kb on + strand, within MMP_RS04805at 914.228 kb on - strand, within MMP_RS04805at 914.383 kb on - strand, within MMP_RS04805at 914.435 kb on - strand, within MMP_RS04805at 914.435 kb on - strand, within MMP_RS04805at 914.436 kb on + strand, within MMP_RS04805at 914.436 kb on + strand, within MMP_RS04805at 914.437 kb on - strand, within MMP_RS04805at 914.437 kb on - strand, within MMP_RS04805at 914.438 kb on + strand, within MMP_RS04805at 914.495 kb on - strand, within MMP_RS04805at 914.495 kb on - strand, within MMP_RS04805at 914.519 kb on + strand, within MMP_RS04805at 914.519 kb on + strand, within MMP_RS04805at 914.544 kb on + strand, within MMP_RS04805

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM
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912,249 - MMP_RS04790 0.64 -0.1
912,249 - MMP_RS04790 0.64 -0.1
912,297 - MMP_RS04790 0.69 -0.3
912,297 - MMP_RS04790 0.69 -0.6
912,298 + MMP_RS04790 0.70 -0.4
912,302 - MMP_RS04790 0.70 -0.6
912,303 + MMP_RS04790 0.70 -0.3
912,360 - MMP_RS04790 0.77 +0.2
912,360 - MMP_RS04790 0.77 +0.4
912,361 + MMP_RS04790 0.77 -0.0
912,393 - MMP_RS04790 0.81 +0.5
912,434 + MMP_RS04790 0.86 -0.3
912,508 - +0.1
912,571 + -1.0
912,609 + +0.0
912,688 + MMP_RS04795 0.22 +0.1
912,721 - MMP_RS04795 0.28 -1.0
912,722 + MMP_RS04795 0.28 -0.1
912,722 + MMP_RS04795 0.28 -1.0
912,722 + MMP_RS04795 0.28 -0.6
912,722 + MMP_RS04795 0.28 -0.0
912,859 + MMP_RS04795 0.51 -0.6
912,871 - MMP_RS04795 0.53 -0.6
912,901 + MMP_RS04795 0.58 -0.5
912,937 - MMP_RS04795 0.64 -2.9
912,978 - MMP_RS04795 0.70 -0.5
913,119 + -0.5
913,132 + -0.6
913,135 + -0.7
913,135 + -0.1
913,136 - -0.9
913,136 - -0.6
913,137 + -0.1
913,139 - -0.3
913,221 - MMP_RS04800 0.12 +0.3
913,248 - MMP_RS04800 0.18 +0.4
913,289 - MMP_RS04800 0.28 +0.4
913,290 + MMP_RS04800 0.28 +0.6
913,290 + MMP_RS04800 0.28 -0.2
913,290 + MMP_RS04800 0.28 +0.3
913,304 + MMP_RS04800 0.31 +0.3
913,342 + MMP_RS04800 0.40 +0.2
913,342 - MMP_RS04800 0.40 +0.1
913,401 - MMP_RS04800 0.53 +0.5
913,401 - MMP_RS04800 0.53 -0.7
913,438 + MMP_RS04800 0.61 +0.6
913,462 + MMP_RS04800 0.67 +0.2
913,555 - MMP_RS04800 0.88 +0.5
913,608 + +0.1
913,630 - -0.5
913,630 - +0.6
913,631 + -0.9
913,673 - +0.1
913,680 + +0.3
913,808 - MMP_RS04805 0.14 -0.1
913,809 + MMP_RS04805 0.14 +0.7
913,813 + MMP_RS04805 0.14 +0.4
913,854 - MMP_RS04805 0.18 -0.2
913,889 - MMP_RS04805 0.21 -0.1
914,001 - MMP_RS04805 0.32 -0.1
914,057 - MMP_RS04805 0.37 +0.1
914,183 - MMP_RS04805 0.48 -0.4
914,187 + MMP_RS04805 0.49 +0.3
914,190 + MMP_RS04805 0.49 -0.1
914,190 + MMP_RS04805 0.49 +0.6
914,190 + MMP_RS04805 0.49 -0.1
914,228 - MMP_RS04805 0.52 +0.6
914,383 - MMP_RS04805 0.66 +0.3
914,435 - MMP_RS04805 0.71 +0.5
914,435 - MMP_RS04805 0.71 +0.3
914,436 + MMP_RS04805 0.71 +0.1
914,436 + MMP_RS04805 0.71 +0.1
914,437 - MMP_RS04805 0.71 -0.3
914,437 - MMP_RS04805 0.71 +0.9
914,438 + MMP_RS04805 0.71 -0.5
914,495 - MMP_RS04805 0.77 +0.2
914,495 - MMP_RS04805 0.77 -0.1
914,519 + MMP_RS04805 0.79 +0.0
914,519 + MMP_RS04805 0.79 -0.2
914,544 + MMP_RS04805 0.81 -0.3

Or see this region's nucleotide sequence