Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04680 and MMP_RS04685 are separated by 66 nucleotides MMP_RS04685 and MMP_RS04690 are separated by 11 nucleotides MMP_RS04690 and MMP_RS09010 are separated by 87 nucleotides MMP_RS09010 and MMP_RS04695 are separated by 35 nucleotides MMP_RS04695 and MMP_RS04700 are separated by 80 nucleotides MMP_RS04700 and MMP_RS04705 are separated by 14 nucleotides
MMP_RS04680: MMP_RS04680 - NOG1 family protein, at 896,279 to 897,316
_RS04680
MMP_RS04685: MMP_RS04685 - DUF126 domain-containing protein, at 897,383 to 897,775
_RS04685
MMP_RS04690: MMP_RS04690 - class III signal peptide-containing protein, at 897,787 to 898,014
_RS04690
MMP_RS09010: MMP_RS09010 - hypothetical protein, at 898,102 to 898,260
_RS09010
MMP_RS04695: MMP_RS04695 - selenide water dikinase SelD, at 898,296 to 899,303
_RS04695
MMP_RS04700: MMP_RS04700 - hypothetical protein, at 899,384 to 899,962
_RS04700
MMP_RS04705: MMP_RS04705 - ribonuclease Z, at 899,977 to 900,903
_RS04705
Position (kb)
898
899
900 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 897.316 kb on - strand at 897.360 kb on - strand at 897.364 kb on + strand at 897.426 kb on + strand, within MMP_RS04685 at 897.426 kb on + strand, within MMP_RS04685 at 897.429 kb on + strand, within MMP_RS04685 at 897.432 kb on + strand, within MMP_RS04685 at 897.455 kb on - strand, within MMP_RS04685 at 897.577 kb on + strand, within MMP_RS04685 at 897.631 kb on - strand, within MMP_RS04685 at 897.897 kb on - strand, within MMP_RS04690 at 897.908 kb on - strand, within MMP_RS04690 at 897.914 kb on - strand, within MMP_RS04690 at 897.953 kb on + strand, within MMP_RS04690 at 898.001 kb on - strand at 898.001 kb on - strand at 898.043 kb on - strand at 898.049 kb on - strand at 898.049 kb on - strand at 898.049 kb on - strand at 898.050 kb on + strand at 898.050 kb on + strand at 898.051 kb on - strand at 898.051 kb on - strand at 898.051 kb on - strand at 898.054 kb on + strand at 898.069 kb on - strand at 898.070 kb on + strand at 898.075 kb on - strand at 898.075 kb on - strand at 898.079 kb on - strand at 898.079 kb on - strand at 898.079 kb on - strand at 898.080 kb on + strand at 898.080 kb on + strand at 898.082 kb on - strand at 898.098 kb on - strand at 898.099 kb on + strand at 898.099 kb on + strand at 898.129 kb on - strand, within MMP_RS09010 at 898.130 kb on + strand, within MMP_RS09010 at 898.130 kb on + strand, within MMP_RS09010 at 898.130 kb on + strand, within MMP_RS09010 at 898.139 kb on - strand, within MMP_RS09010 at 898.139 kb on - strand, within MMP_RS09010 at 898.140 kb on + strand, within MMP_RS09010 at 898.140 kb on + strand, within MMP_RS09010 at 898.165 kb on + strand, within MMP_RS09010 at 898.237 kb on - strand, within MMP_RS09010 at 898.679 kb on - strand, within MMP_RS04695 at 898.998 kb on - strand, within MMP_RS04695 at 898.999 kb on + strand, within MMP_RS04695 at 898.999 kb on + strand, within MMP_RS04695 at 899.028 kb on - strand, within MMP_RS04695 at 899.029 kb on + strand, within MMP_RS04695 at 899.066 kb on + strand, within MMP_RS04695 at 899.067 kb on - strand, within MMP_RS04695 at 899.068 kb on + strand, within MMP_RS04695 at 899.068 kb on + strand, within MMP_RS04695 at 899.085 kb on + strand, within MMP_RS04695 at 899.236 kb on + strand at 899.245 kb on + strand at 899.276 kb on - strand at 899.355 kb on - strand at 899.355 kb on - strand at 899.366 kb on - strand at 899.366 kb on - strand at 899.366 kb on - strand at 899.366 kb on - strand at 899.367 kb on + strand at 899.367 kb on + strand at 899.368 kb on - strand at 899.368 kb on - strand at 899.368 kb on - strand at 899.369 kb on + strand at 899.375 kb on - strand at 899.376 kb on + strand at 899.376 kb on + strand at 899.376 kb on + strand at 899.385 kb on - strand at 899.385 kb on - strand at 899.385 kb on - strand at 899.386 kb on + strand at 899.386 kb on + strand at 899.418 kb on + strand at 899.418 kb on + strand at 899.420 kb on - strand at 899.558 kb on - strand, within MMP_RS04700 at 899.559 kb on + strand, within MMP_RS04700 at 899.564 kb on - strand, within MMP_RS04700 at 899.565 kb on + strand, within MMP_RS04700 at 899.571 kb on - strand, within MMP_RS04700 at 899.576 kb on - strand, within MMP_RS04700 at 899.581 kb on - strand, within MMP_RS04700 at 899.582 kb on + strand, within MMP_RS04700 at 899.693 kb on + strand, within MMP_RS04700 at 899.778 kb on - strand, within MMP_RS04700 at 899.779 kb on + strand, within MMP_RS04700 at 899.799 kb on + strand, within MMP_RS04700 at 899.799 kb on + strand, within MMP_RS04700 at 899.804 kb on - strand, within MMP_RS04700 at 899.805 kb on + strand, within MMP_RS04700 at 899.820 kb on + strand, within MMP_RS04700 at 899.824 kb on - strand, within MMP_RS04700 at 899.825 kb on + strand, within MMP_RS04700 at 899.865 kb on + strand, within MMP_RS04700 at 899.865 kb on + strand, within MMP_RS04700 at 899.912 kb on - strand at 899.913 kb on + strand at 899.917 kb on - strand at 899.917 kb on - strand at 899.918 kb on + strand at 899.918 kb on + strand at 900.074 kb on + strand at 900.265 kb on - strand at 900.298 kb on - strand at 900.299 kb on + strand at 900.299 kb on + strand at 900.299 kb on + strand at 900.299 kb on + strand at 900.299 kb on + strand at 900.299 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 897,316 - -1.4 897,360 - -2.6 897,364 + -0.6 897,426 + MMP_RS04685 0.11 -3.9 897,426 + MMP_RS04685 0.11 -1.0 897,429 + MMP_RS04685 0.12 -0.9 897,432 + MMP_RS04685 0.12 -1.6 897,455 - MMP_RS04685 0.18 -1.7 897,577 + MMP_RS04685 0.49 -2.6 897,631 - MMP_RS04685 0.63 -0.0 897,897 - MMP_RS04690 0.48 +0.7 897,908 - MMP_RS04690 0.53 -0.2 897,914 - MMP_RS04690 0.56 -0.5 897,953 + MMP_RS04690 0.73 -1.0 898,001 - -0.1 898,001 - +0.6 898,043 - +0.2 898,049 - +0.5 898,049 - -0.2 898,049 - -0.5 898,050 + -2.1 898,050 + -0.1 898,051 - +0.5 898,051 - +0.4 898,051 - -0.3 898,054 + +0.3 898,069 - +0.3 898,070 + -0.1 898,075 - -0.3 898,075 - -0.5 898,079 - +0.3 898,079 - -0.2 898,079 - -0.5 898,080 + +0.1 898,080 + +0.7 898,082 - -1.1 898,098 - -0.3 898,099 + +0.1 898,099 + -0.2 898,129 - MMP_RS09010 0.17 -0.2 898,130 + MMP_RS09010 0.18 -0.6 898,130 + MMP_RS09010 0.18 -0.0 898,130 + MMP_RS09010 0.18 +0.2 898,139 - MMP_RS09010 0.23 -0.4 898,139 - MMP_RS09010 0.23 -0.2 898,140 + MMP_RS09010 0.24 +0.3 898,140 + MMP_RS09010 0.24 -0.4 898,165 + MMP_RS09010 0.40 -0.6 898,237 - MMP_RS09010 0.85 -1.0 898,679 - MMP_RS04695 0.38 -4.1 898,998 - MMP_RS04695 0.70 -2.3 898,999 + MMP_RS04695 0.70 -3.1 898,999 + MMP_RS04695 0.70 -4.4 899,028 - MMP_RS04695 0.73 -5.4 899,029 + MMP_RS04695 0.73 -3.8 899,066 + MMP_RS04695 0.76 -4.1 899,067 - MMP_RS04695 0.76 -2.9 899,068 + MMP_RS04695 0.77 -4.7 899,068 + MMP_RS04695 0.77 -3.6 899,085 + MMP_RS04695 0.78 -4.5 899,236 + -4.5 899,245 + -2.2 899,276 - -4.1 899,355 - -3.5 899,355 - -3.0 899,366 - -1.4 899,366 - -1.8 899,366 - -1.5 899,366 - -0.9 899,367 + -3.2 899,367 + -3.8 899,368 - -0.3 899,368 - -0.5 899,368 - -0.5 899,369 + -3.9 899,375 - -0.7 899,376 + -3.6 899,376 + -4.4 899,376 + -2.6 899,385 - -1.2 899,385 - -1.1 899,385 - -0.5 899,386 + -3.0 899,386 + -2.8 899,418 + -0.8 899,418 + +0.2 899,420 - -0.1 899,558 - MMP_RS04700 0.30 +0.6 899,559 + MMP_RS04700 0.30 -0.3 899,564 - MMP_RS04700 0.31 -0.2 899,565 + MMP_RS04700 0.31 -0.2 899,571 - MMP_RS04700 0.32 -0.3 899,576 - MMP_RS04700 0.33 +0.1 899,581 - MMP_RS04700 0.34 +0.4 899,582 + MMP_RS04700 0.34 +0.5 899,693 + MMP_RS04700 0.53 +0.1 899,778 - MMP_RS04700 0.68 +0.2 899,779 + MMP_RS04700 0.68 +0.6 899,799 + MMP_RS04700 0.72 -0.0 899,799 + MMP_RS04700 0.72 -0.1 899,804 - MMP_RS04700 0.73 -0.3 899,805 + MMP_RS04700 0.73 -0.0 899,820 + MMP_RS04700 0.75 -1.1 899,824 - MMP_RS04700 0.76 +0.3 899,825 + MMP_RS04700 0.76 +0.1 899,865 + MMP_RS04700 0.83 -1.4 899,865 + MMP_RS04700 0.83 +0.5 899,912 - +0.2 899,913 + +0.0 899,917 - +0.7 899,917 - -0.4 899,918 + -0.3 899,918 + +0.2 900,074 + -1.6 900,265 - -1.7 900,298 - -2.1 900,299 + -2.7 900,299 + -2.5 900,299 + -2.1 900,299 + -1.0 900,299 + -0.7 900,299 + -1.5
Or see this region's nucleotide sequence