Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04505 and MMP_RS04510 are separated by 15 nucleotides MMP_RS04510 and MMP_RS04515 are separated by 13 nucleotides MMP_RS04515 and MMP_RS04520 are separated by 443 nucleotides MMP_RS04520 and MMP_RS04525 are separated by 31 nucleotides
MMP_RS04505: MMP_RS04505 - glycine betaine ABC transporter substrate-binding protein, at 857,796 to 858,683
_RS04505
MMP_RS04510: MMP_RS04510 - ABC transporter permease subunit, at 858,699 to 859,532
_RS04510
MMP_RS04515: MMP_RS04515 - betaine/proline/choline family ABC transporter ATP-binding protein, at 859,546 to 860,715
_RS04515
MMP_RS04520: MMP_RS04520 - nucleoside deaminase, at 861,159 to 861,596
_RS04520
MMP_RS04525: MMP_RS04525 - D-2-hydroxyacid dehydrogenase, at 861,628 to 862,584
_RS04525
Position (kb) 859
860
861 Strain fitness (log2 ratio) -1
0
1 at 858.546 kb on + strand, within MMP_RS04505 at 858.546 kb on + strand, within MMP_RS04505 at 858.697 kb on - strand at 858.759 kb on + strand at 858.794 kb on - strand, within MMP_RS04510 at 858.795 kb on + strand, within MMP_RS04510 at 858.816 kb on - strand, within MMP_RS04510 at 858.946 kb on + strand, within MMP_RS04510 at 859.115 kb on + strand, within MMP_RS04510 at 859.115 kb on + strand, within MMP_RS04510 at 859.141 kb on + strand, within MMP_RS04510 at 859.170 kb on - strand, within MMP_RS04510 at 859.171 kb on + strand, within MMP_RS04510 at 859.191 kb on - strand, within MMP_RS04510 at 859.292 kb on - strand, within MMP_RS04510 at 859.295 kb on - strand, within MMP_RS04510 at 859.353 kb on - strand, within MMP_RS04510 at 859.354 kb on + strand, within MMP_RS04510 at 859.386 kb on - strand, within MMP_RS04510 at 859.431 kb on - strand, within MMP_RS04510 at 859.431 kb on - strand, within MMP_RS04510 at 859.431 kb on - strand, within MMP_RS04510 at 859.432 kb on + strand, within MMP_RS04510 at 859.435 kb on - strand, within MMP_RS04510 at 859.436 kb on + strand, within MMP_RS04510 at 859.467 kb on + strand at 859.467 kb on + strand at 859.517 kb on - strand at 859.548 kb on + strand at 859.548 kb on + strand at 859.557 kb on - strand at 859.563 kb on - strand at 859.587 kb on + strand at 859.613 kb on + strand at 859.673 kb on + strand, within MMP_RS04515 at 859.689 kb on - strand, within MMP_RS04515 at 859.690 kb on + strand, within MMP_RS04515 at 859.690 kb on + strand, within MMP_RS04515 at 859.758 kb on + strand, within MMP_RS04515 at 859.777 kb on - strand, within MMP_RS04515 at 859.777 kb on - strand, within MMP_RS04515 at 859.778 kb on + strand, within MMP_RS04515 at 859.781 kb on - strand, within MMP_RS04515 at 859.782 kb on + strand, within MMP_RS04515 at 859.799 kb on + strand, within MMP_RS04515 at 859.839 kb on - strand, within MMP_RS04515 at 859.839 kb on - strand, within MMP_RS04515 at 859.842 kb on - strand, within MMP_RS04515 at 859.843 kb on + strand, within MMP_RS04515 at 860.047 kb on - strand, within MMP_RS04515 at 860.153 kb on + strand, within MMP_RS04515 at 860.167 kb on - strand, within MMP_RS04515 at 860.391 kb on + strand, within MMP_RS04515 at 860.401 kb on + strand, within MMP_RS04515 at 860.491 kb on + strand, within MMP_RS04515 at 860.493 kb on - strand, within MMP_RS04515 at 860.493 kb on - strand, within MMP_RS04515 at 860.493 kb on - strand, within MMP_RS04515 at 860.493 kb on - strand, within MMP_RS04515 at 860.493 kb on - strand, within MMP_RS04515 at 860.494 kb on + strand, within MMP_RS04515 at 860.501 kb on + strand, within MMP_RS04515 at 860.571 kb on - strand, within MMP_RS04515 at 860.574 kb on - strand, within MMP_RS04515 at 860.575 kb on + strand, within MMP_RS04515 at 860.580 kb on - strand, within MMP_RS04515 at 860.703 kb on - strand at 860.704 kb on + strand at 860.716 kb on + strand at 860.717 kb on - strand at 860.766 kb on - strand at 860.795 kb on - strand at 860.796 kb on + strand at 860.819 kb on + strand at 860.837 kb on + strand at 860.837 kb on + strand at 860.848 kb on - strand at 860.855 kb on - strand at 860.856 kb on + strand at 860.875 kb on - strand at 860.880 kb on - strand at 860.881 kb on + strand at 860.885 kb on + strand at 860.943 kb on + strand at 861.008 kb on + strand at 861.088 kb on - strand at 861.088 kb on - strand at 861.088 kb on - strand at 861.397 kb on - strand, within MMP_RS04520 at 861.423 kb on - strand, within MMP_RS04520 at 861.514 kb on - strand, within MMP_RS04520 at 861.599 kb on - strand at 861.642 kb on + strand at 861.715 kb on - strand at 861.715 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 858,546 + MMP_RS04505 0.84 +0.7 858,546 + MMP_RS04505 0.84 -0.3 858,697 - +0.4 858,759 + +0.5 858,794 - MMP_RS04510 0.11 -0.5 858,795 + MMP_RS04510 0.12 +0.2 858,816 - MMP_RS04510 0.14 -0.1 858,946 + MMP_RS04510 0.30 -0.0 859,115 + MMP_RS04510 0.50 +0.4 859,115 + MMP_RS04510 0.50 +0.1 859,141 + MMP_RS04510 0.53 -0.2 859,170 - MMP_RS04510 0.56 -0.6 859,171 + MMP_RS04510 0.57 -0.1 859,191 - MMP_RS04510 0.59 +0.4 859,292 - MMP_RS04510 0.71 +0.3 859,295 - MMP_RS04510 0.71 +0.4 859,353 - MMP_RS04510 0.78 +0.6 859,354 + MMP_RS04510 0.79 -0.6 859,386 - MMP_RS04510 0.82 +0.0 859,431 - MMP_RS04510 0.88 +0.2 859,431 - MMP_RS04510 0.88 +0.6 859,431 - MMP_RS04510 0.88 +0.3 859,432 + MMP_RS04510 0.88 -0.1 859,435 - MMP_RS04510 0.88 +0.1 859,436 + MMP_RS04510 0.88 +0.3 859,467 + -0.1 859,467 + -0.2 859,517 - +0.3 859,548 + +0.5 859,548 + +0.4 859,557 - +0.2 859,563 - +0.9 859,587 + +0.3 859,613 + -1.3 859,673 + MMP_RS04515 0.11 +0.2 859,689 - MMP_RS04515 0.12 +0.4 859,690 + MMP_RS04515 0.12 -0.2 859,690 + MMP_RS04515 0.12 -0.8 859,758 + MMP_RS04515 0.18 +0.0 859,777 - MMP_RS04515 0.20 -0.4 859,777 - MMP_RS04515 0.20 +0.4 859,778 + MMP_RS04515 0.20 -0.2 859,781 - MMP_RS04515 0.20 +1.4 859,782 + MMP_RS04515 0.20 +0.6 859,799 + MMP_RS04515 0.22 +0.3 859,839 - MMP_RS04515 0.25 +0.0 859,839 - MMP_RS04515 0.25 +0.8 859,842 - MMP_RS04515 0.25 -0.5 859,843 + MMP_RS04515 0.25 -0.5 860,047 - MMP_RS04515 0.43 +0.5 860,153 + MMP_RS04515 0.52 -0.2 860,167 - MMP_RS04515 0.53 +0.3 860,391 + MMP_RS04515 0.72 +0.5 860,401 + MMP_RS04515 0.73 +0.4 860,491 + MMP_RS04515 0.81 +0.4 860,493 - MMP_RS04515 0.81 +0.4 860,493 - MMP_RS04515 0.81 +0.3 860,493 - MMP_RS04515 0.81 -0.8 860,493 - MMP_RS04515 0.81 +0.0 860,493 - MMP_RS04515 0.81 +0.2 860,494 + MMP_RS04515 0.81 +0.1 860,501 + MMP_RS04515 0.82 -0.2 860,571 - MMP_RS04515 0.88 +0.6 860,574 - MMP_RS04515 0.88 +0.8 860,575 + MMP_RS04515 0.88 -0.2 860,580 - MMP_RS04515 0.88 +0.3 860,703 - +0.1 860,704 + +0.5 860,716 + +0.1 860,717 - +0.1 860,766 - +0.2 860,795 - +1.0 860,796 + -0.2 860,819 + +0.1 860,837 + +0.7 860,837 + -0.1 860,848 - +0.1 860,855 - -0.0 860,856 + +0.6 860,875 - -0.2 860,880 - +0.1 860,881 + -0.0 860,885 + -0.1 860,943 + +0.4 861,008 + +0.2 861,088 - +0.5 861,088 - -0.2 861,088 - -1.4 861,397 - MMP_RS04520 0.54 +0.1 861,423 - MMP_RS04520 0.60 +0.1 861,514 - MMP_RS04520 0.81 -0.1 861,599 - +1.2 861,642 + +0.4 861,715 - -0.9 861,715 - -0.4
Or see this region's nucleotide sequence