Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04335 and MMP_RS04340 are separated by 5 nucleotides MMP_RS04340 and MMP_RS04345 are separated by 68 nucleotides MMP_RS04345 and MMP_RS04350 are separated by 220 nucleotides
MMP_RS04335: MMP_RS04335 - GTP-binding protein, at 827,876 to 828,784
_RS04335
MMP_RS04340: MMP_RS04340 - uroporphyrinogen decarboxylase, at 828,790 to 829,653
_RS04340
MMP_RS04345: MMP_RS04345 - MFS transporter, at 829,722 to 831,026
_RS04345
MMP_RS04350: MMP_RS04350 - 2-hydroxyacyl-CoA dehydratase family protein, at 831,247 to 832,368
_RS04350
Position (kb) 829
830
831
832 Strain fitness (log2 ratio) -2
-1
0
1 at 828.760 kb on + strand at 829.058 kb on - strand, within MMP_RS04340 at 829.059 kb on + strand, within MMP_RS04340 at 829.065 kb on - strand, within MMP_RS04340 at 829.066 kb on + strand, within MMP_RS04340 at 829.082 kb on + strand, within MMP_RS04340 at 829.084 kb on - strand, within MMP_RS04340 at 829.084 kb on - strand, within MMP_RS04340 at 829.084 kb on - strand, within MMP_RS04340 at 829.084 kb on - strand, within MMP_RS04340 at 829.084 kb on - strand, within MMP_RS04340 at 829.085 kb on + strand, within MMP_RS04340 at 829.085 kb on + strand, within MMP_RS04340 at 829.092 kb on - strand, within MMP_RS04340 at 829.154 kb on - strand, within MMP_RS04340 at 829.154 kb on - strand, within MMP_RS04340 at 829.154 kb on - strand, within MMP_RS04340 at 829.155 kb on + strand, within MMP_RS04340 at 829.155 kb on + strand, within MMP_RS04340 at 829.155 kb on + strand, within MMP_RS04340 at 829.155 kb on + strand, within MMP_RS04340 at 829.320 kb on - strand, within MMP_RS04340 at 829.545 kb on - strand, within MMP_RS04340 at 829.545 kb on - strand, within MMP_RS04340 at 829.546 kb on + strand, within MMP_RS04340 at 829.549 kb on - strand, within MMP_RS04340 at 829.550 kb on + strand, within MMP_RS04340 at 829.550 kb on + strand, within MMP_RS04340 at 829.669 kb on - strand at 829.724 kb on + strand at 829.785 kb on - strand at 829.786 kb on + strand at 829.836 kb on + strand at 829.948 kb on + strand, within MMP_RS04345 at 829.967 kb on + strand, within MMP_RS04345 at 829.971 kb on - strand, within MMP_RS04345 at 829.971 kb on - strand, within MMP_RS04345 at 829.972 kb on + strand, within MMP_RS04345 at 829.972 kb on + strand, within MMP_RS04345 at 829.972 kb on + strand, within MMP_RS04345 at 830.008 kb on - strand, within MMP_RS04345 at 830.008 kb on - strand, within MMP_RS04345 at 830.009 kb on + strand, within MMP_RS04345 at 830.018 kb on - strand, within MMP_RS04345 at 830.157 kb on - strand, within MMP_RS04345 at 830.197 kb on - strand, within MMP_RS04345 at 830.322 kb on - strand, within MMP_RS04345 at 830.323 kb on + strand, within MMP_RS04345 at 830.326 kb on + strand, within MMP_RS04345 at 830.353 kb on + strand, within MMP_RS04345 at 830.461 kb on + strand, within MMP_RS04345 at 830.461 kb on + strand, within MMP_RS04345 at 830.494 kb on + strand, within MMP_RS04345 at 830.507 kb on - strand, within MMP_RS04345 at 830.511 kb on - strand, within MMP_RS04345 at 830.527 kb on + strand, within MMP_RS04345 at 830.527 kb on + strand, within MMP_RS04345 at 830.597 kb on - strand, within MMP_RS04345 at 830.660 kb on - strand, within MMP_RS04345 at 830.662 kb on - strand, within MMP_RS04345 at 830.662 kb on - strand, within MMP_RS04345 at 830.663 kb on + strand, within MMP_RS04345 at 830.663 kb on + strand, within MMP_RS04345 at 830.729 kb on - strand, within MMP_RS04345 at 830.836 kb on - strand, within MMP_RS04345 at 830.862 kb on - strand, within MMP_RS04345 at 830.901 kb on + strand at 830.953 kb on - strand at 830.989 kb on - strand at 831.028 kb on - strand at 831.028 kb on - strand at 831.028 kb on - strand at 831.028 kb on - strand at 831.028 kb on - strand at 831.205 kb on + strand at 831.208 kb on + strand at 831.212 kb on - strand at 831.212 kb on - strand at 831.212 kb on - strand at 831.213 kb on + strand at 831.219 kb on - strand at 831.225 kb on + strand at 831.258 kb on + strand at 831.338 kb on - strand at 831.375 kb on - strand, within MMP_RS04350 at 831.376 kb on + strand, within MMP_RS04350 at 831.378 kb on + strand, within MMP_RS04350 at 831.463 kb on + strand, within MMP_RS04350 at 831.463 kb on + strand, within MMP_RS04350 at 831.477 kb on - strand, within MMP_RS04350 at 831.607 kb on - strand, within MMP_RS04350 at 831.686 kb on + strand, within MMP_RS04350 at 831.789 kb on + strand, within MMP_RS04350 at 831.871 kb on + strand, within MMP_RS04350 at 831.893 kb on - strand, within MMP_RS04350 at 831.894 kb on + strand, within MMP_RS04350 at 831.894 kb on + strand, within MMP_RS04350 at 831.934 kb on - strand, within MMP_RS04350
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 828,760 + +0.2 829,058 - MMP_RS04340 0.31 -0.1 829,059 + MMP_RS04340 0.31 +0.2 829,065 - MMP_RS04340 0.32 +0.5 829,066 + MMP_RS04340 0.32 -0.5 829,082 + MMP_RS04340 0.34 -0.0 829,084 - MMP_RS04340 0.34 +0.2 829,084 - MMP_RS04340 0.34 -1.4 829,084 - MMP_RS04340 0.34 +0.5 829,084 - MMP_RS04340 0.34 -0.1 829,084 - MMP_RS04340 0.34 +0.5 829,085 + MMP_RS04340 0.34 +0.0 829,085 + MMP_RS04340 0.34 -0.5 829,092 - MMP_RS04340 0.35 +1.2 829,154 - MMP_RS04340 0.42 +0.5 829,154 - MMP_RS04340 0.42 +0.4 829,154 - MMP_RS04340 0.42 -0.1 829,155 + MMP_RS04340 0.42 -0.3 829,155 + MMP_RS04340 0.42 +0.0 829,155 + MMP_RS04340 0.42 -0.2 829,155 + MMP_RS04340 0.42 -0.0 829,320 - MMP_RS04340 0.61 -0.1 829,545 - MMP_RS04340 0.87 +0.5 829,545 - MMP_RS04340 0.87 -0.0 829,546 + MMP_RS04340 0.88 -0.2 829,549 - MMP_RS04340 0.88 +1.0 829,550 + MMP_RS04340 0.88 +0.0 829,550 + MMP_RS04340 0.88 -0.1 829,669 - -0.2 829,724 + +0.2 829,785 - +0.3 829,786 + +1.0 829,836 + -0.1 829,948 + MMP_RS04345 0.17 -0.7 829,967 + MMP_RS04345 0.19 +0.6 829,971 - MMP_RS04345 0.19 +0.6 829,971 - MMP_RS04345 0.19 +0.7 829,972 + MMP_RS04345 0.19 +0.3 829,972 + MMP_RS04345 0.19 -0.3 829,972 + MMP_RS04345 0.19 +0.6 830,008 - MMP_RS04345 0.22 +0.4 830,008 - MMP_RS04345 0.22 +1.0 830,009 + MMP_RS04345 0.22 +0.7 830,018 - MMP_RS04345 0.23 +0.2 830,157 - MMP_RS04345 0.33 +0.6 830,197 - MMP_RS04345 0.36 +0.4 830,322 - MMP_RS04345 0.46 +0.9 830,323 + MMP_RS04345 0.46 +1.0 830,326 + MMP_RS04345 0.46 +0.4 830,353 + MMP_RS04345 0.48 +0.4 830,461 + MMP_RS04345 0.57 +0.3 830,461 + MMP_RS04345 0.57 -0.2 830,494 + MMP_RS04345 0.59 -0.2 830,507 - MMP_RS04345 0.60 +1.0 830,511 - MMP_RS04345 0.60 -0.4 830,527 + MMP_RS04345 0.62 +0.3 830,527 + MMP_RS04345 0.62 +0.5 830,597 - MMP_RS04345 0.67 -0.1 830,660 - MMP_RS04345 0.72 +0.7 830,662 - MMP_RS04345 0.72 +0.7 830,662 - MMP_RS04345 0.72 +0.4 830,663 + MMP_RS04345 0.72 +0.5 830,663 + MMP_RS04345 0.72 +0.1 830,729 - MMP_RS04345 0.77 +0.1 830,836 - MMP_RS04345 0.85 -0.8 830,862 - MMP_RS04345 0.87 +0.7 830,901 + +0.7 830,953 - +0.6 830,989 - +0.7 831,028 - -0.2 831,028 - +0.3 831,028 - +0.3 831,028 - +1.0 831,028 - +0.3 831,205 + +0.0 831,208 + -1.4 831,212 - -1.2 831,212 - -1.2 831,212 - -1.9 831,213 + +0.3 831,219 - -0.6 831,225 + -0.6 831,258 + -0.0 831,338 - -1.0 831,375 - MMP_RS04350 0.11 -0.1 831,376 + MMP_RS04350 0.11 +0.5 831,378 + MMP_RS04350 0.12 -0.6 831,463 + MMP_RS04350 0.19 +0.3 831,463 + MMP_RS04350 0.19 -0.1 831,477 - MMP_RS04350 0.20 +0.4 831,607 - MMP_RS04350 0.32 +0.3 831,686 + MMP_RS04350 0.39 -0.2 831,789 + MMP_RS04350 0.48 -1.0 831,871 + MMP_RS04350 0.56 +0.8 831,893 - MMP_RS04350 0.58 +0.2 831,894 + MMP_RS04350 0.58 +0.5 831,894 + MMP_RS04350 0.58 +0.3 831,934 - MMP_RS04350 0.61 -0.9
Or see this region's nucleotide sequence