Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04050

Experiment: Formate with hypochlorite 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS04040 and MMP_RS04045 are separated by 11 nucleotidesMMP_RS04045 and MMP_RS04050 are separated by 100 nucleotidesMMP_RS04050 and MMP_RS04055 are separated by 15 nucleotidesMMP_RS04055 and MMP_RS04060 are separated by 26 nucleotidesMMP_RS04060 and MMP_RS04065 are separated by 29 nucleotides MMP_RS04040: MMP_RS04040 - hypothetical protein, at 766,242 to 766,721 _RS04040 MMP_RS04045: MMP_RS04045 - hypothetical protein, at 766,733 to 767,473 _RS04045 MMP_RS04050: MMP_RS04050 - hypothetical protein, at 767,574 to 767,810 _RS04050 MMP_RS04055: MMP_RS04055 - hypothetical protein, at 767,826 to 768,143 _RS04055 MMP_RS04060: MMP_RS04060 - hypothetical protein, at 768,170 to 768,685 _RS04060 MMP_RS04065: MMP_RS04065 - hypothetical protein, at 768,715 to 770,745 _RS04065 Position (kb) 767 768Strain fitness (log2 ratio) -2 -1 0 1at 766.626 kb on + strand, within MMP_RS04040at 766.629 kb on - strand, within MMP_RS04040at 766.757 kb on + strandat 766.819 kb on + strand, within MMP_RS04045at 766.897 kb on - strand, within MMP_RS04045at 766.985 kb on - strand, within MMP_RS04045at 767.046 kb on + strand, within MMP_RS04045at 767.053 kb on - strand, within MMP_RS04045at 767.053 kb on - strand, within MMP_RS04045at 767.054 kb on + strand, within MMP_RS04045at 767.145 kb on - strand, within MMP_RS04045at 767.182 kb on - strand, within MMP_RS04045at 767.186 kb on - strand, within MMP_RS04045at 767.199 kb on + strand, within MMP_RS04045at 767.252 kb on - strand, within MMP_RS04045at 767.274 kb on + strand, within MMP_RS04045at 767.303 kb on - strand, within MMP_RS04045at 767.397 kb on - strand, within MMP_RS04045at 767.397 kb on - strand, within MMP_RS04045at 767.398 kb on + strand, within MMP_RS04045at 767.576 kb on + strandat 767.581 kb on + strandat 767.621 kb on - strand, within MMP_RS04050at 767.677 kb on - strand, within MMP_RS04050at 767.712 kb on + strand, within MMP_RS04050at 767.742 kb on - strand, within MMP_RS04050at 767.787 kb on - strandat 767.924 kb on + strand, within MMP_RS04055at 768.292 kb on + strand, within MMP_RS04060at 768.317 kb on - strand, within MMP_RS04060at 768.425 kb on - strand, within MMP_RS04060at 768.426 kb on + strand, within MMP_RS04060at 768.491 kb on - strand, within MMP_RS04060at 768.575 kb on - strand, within MMP_RS04060at 768.576 kb on + strand, within MMP_RS04060at 768.668 kb on + strandat 768.775 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM
remove
766,626 + MMP_RS04040 0.80 +0.5
766,629 - MMP_RS04040 0.81 -0.7
766,757 + -0.1
766,819 + MMP_RS04045 0.12 -0.1
766,897 - MMP_RS04045 0.22 +0.8
766,985 - MMP_RS04045 0.34 -1.4
767,046 + MMP_RS04045 0.42 -0.7
767,053 - MMP_RS04045 0.43 -0.2
767,053 - MMP_RS04045 0.43 -0.8
767,054 + MMP_RS04045 0.43 +0.8
767,145 - MMP_RS04045 0.56 +0.3
767,182 - MMP_RS04045 0.61 -0.7
767,186 - MMP_RS04045 0.61 +0.0
767,199 + MMP_RS04045 0.63 +0.1
767,252 - MMP_RS04045 0.70 -0.3
767,274 + MMP_RS04045 0.73 +0.6
767,303 - MMP_RS04045 0.77 +0.8
767,397 - MMP_RS04045 0.90 +0.8
767,397 - MMP_RS04045 0.90 +0.2
767,398 + MMP_RS04045 0.90 -0.0
767,576 + +0.7
767,581 + +0.3
767,621 - MMP_RS04050 0.20 +0.3
767,677 - MMP_RS04050 0.43 +0.5
767,712 + MMP_RS04050 0.58 +0.0
767,742 - MMP_RS04050 0.71 +0.2
767,787 - -0.2
767,924 + MMP_RS04055 0.31 -0.3
768,292 + MMP_RS04060 0.24 +0.0
768,317 - MMP_RS04060 0.28 +0.2
768,425 - MMP_RS04060 0.49 -1.0
768,426 + MMP_RS04060 0.50 +0.3
768,491 - MMP_RS04060 0.62 +0.4
768,575 - MMP_RS04060 0.78 +0.8
768,576 + MMP_RS04060 0.79 +0.3
768,668 + -2.6
768,775 - -0.1

Or see this region's nucleotide sequence