Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03675

Experiment: Formate with hypochlorite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03665 and MMP_RS03670 are separated by 194 nucleotidesMMP_RS03670 and MMP_RS03675 are separated by 36 nucleotidesMMP_RS03675 and MMP_RS03680 are separated by 4 nucleotides MMP_RS03665: MMP_RS03665 - PadR family transcriptional regulator, at 691,236 to 691,787 _RS03665 MMP_RS03670: MMP_RS03670 - DUF1890 domain-containing protein, at 691,982 to 692,425 _RS03670 MMP_RS03675: MMP_RS03675 - RimK family alpha-L-glutamate ligase, at 692,462 to 693,340 _RS03675 MMP_RS03680: MMP_RS03680 - hypothetical protein, at 693,345 to 694,367 _RS03680 Position (kb) 692 693 694Strain fitness (log2 ratio) -2 -1 0 1at 691.633 kb on + strand, within MMP_RS03665at 691.639 kb on - strand, within MMP_RS03665at 691.639 kb on - strand, within MMP_RS03665at 691.639 kb on - strand, within MMP_RS03665at 691.639 kb on - strand, within MMP_RS03665at 691.639 kb on - strand, within MMP_RS03665at 691.640 kb on + strand, within MMP_RS03665at 691.640 kb on + strand, within MMP_RS03665at 691.642 kb on - strand, within MMP_RS03665at 691.642 kb on - strand, within MMP_RS03665at 691.643 kb on + strand, within MMP_RS03665at 691.643 kb on + strand, within MMP_RS03665at 691.643 kb on + strand, within MMP_RS03665at 691.643 kb on + strand, within MMP_RS03665at 691.643 kb on + strand, within MMP_RS03665at 691.717 kb on - strand, within MMP_RS03665at 691.717 kb on - strand, within MMP_RS03665at 691.718 kb on + strand, within MMP_RS03665at 691.718 kb on + strand, within MMP_RS03665at 691.718 kb on + strand, within MMP_RS03665at 691.758 kb on - strandat 691.759 kb on + strandat 691.789 kb on + strandat 691.801 kb on - strandat 691.839 kb on - strandat 691.843 kb on - strandat 691.843 kb on - strandat 691.844 kb on + strandat 691.845 kb on - strandat 691.871 kb on - strandat 691.875 kb on - strandat 691.876 kb on + strandat 691.898 kb on + strandat 691.905 kb on + strandat 691.933 kb on + strandat 691.956 kb on + strandat 691.956 kb on + strandat 691.956 kb on + strandat 691.956 kb on + strandat 691.967 kb on + strandat 692.053 kb on - strand, within MMP_RS03670at 692.080 kb on + strand, within MMP_RS03670at 692.141 kb on - strand, within MMP_RS03670at 692.243 kb on - strand, within MMP_RS03670at 692.251 kb on + strand, within MMP_RS03670at 692.256 kb on + strand, within MMP_RS03670at 692.423 kb on - strandat 692.442 kb on + strandat 692.442 kb on + strandat 692.461 kb on - strandat 692.462 kb on + strandat 692.548 kb on - strandat 692.551 kb on - strand, within MMP_RS03675at 692.552 kb on + strand, within MMP_RS03675at 692.552 kb on + strand, within MMP_RS03675at 692.553 kb on - strand, within MMP_RS03675at 692.609 kb on + strand, within MMP_RS03675at 692.617 kb on - strand, within MMP_RS03675at 692.619 kb on - strand, within MMP_RS03675at 692.619 kb on - strand, within MMP_RS03675at 692.620 kb on + strand, within MMP_RS03675at 692.620 kb on + strand, within MMP_RS03675at 692.628 kb on - strand, within MMP_RS03675at 692.692 kb on + strand, within MMP_RS03675at 692.692 kb on + strand, within MMP_RS03675at 692.697 kb on + strand, within MMP_RS03675at 692.697 kb on + strand, within MMP_RS03675at 692.709 kb on + strand, within MMP_RS03675at 692.721 kb on - strand, within MMP_RS03675at 692.721 kb on - strand, within MMP_RS03675at 692.721 kb on - strand, within MMP_RS03675at 692.721 kb on - strand, within MMP_RS03675at 692.830 kb on - strand, within MMP_RS03675at 692.830 kb on - strand, within MMP_RS03675at 692.908 kb on + strand, within MMP_RS03675at 692.983 kb on - strand, within MMP_RS03675at 693.198 kb on - strand, within MMP_RS03675at 693.199 kb on + strand, within MMP_RS03675at 693.240 kb on - strand, within MMP_RS03675at 693.240 kb on - strand, within MMP_RS03675at 693.286 kb on + strandat 693.359 kb on + strandat 693.359 kb on + strandat 693.359 kb on + strandat 693.359 kb on + strandat 693.361 kb on + strandat 693.432 kb on - strandat 693.466 kb on - strand, within MMP_RS03680at 693.467 kb on + strand, within MMP_RS03680at 693.467 kb on + strand, within MMP_RS03680at 693.467 kb on + strand, within MMP_RS03680at 693.717 kb on - strand, within MMP_RS03680at 693.815 kb on + strand, within MMP_RS03680at 694.043 kb on - strand, within MMP_RS03680at 694.048 kb on + strand, within MMP_RS03680at 694.067 kb on + strand, within MMP_RS03680at 694.067 kb on + strand, within MMP_RS03680at 694.276 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM
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691,633 + MMP_RS03665 0.72 +0.6
691,639 - MMP_RS03665 0.73 -0.2
691,639 - MMP_RS03665 0.73 +0.6
691,639 - MMP_RS03665 0.73 -0.0
691,639 - MMP_RS03665 0.73 +0.3
691,639 - MMP_RS03665 0.73 -0.2
691,640 + MMP_RS03665 0.73 +1.4
691,640 + MMP_RS03665 0.73 +0.3
691,642 - MMP_RS03665 0.74 -0.9
691,642 - MMP_RS03665 0.74 -0.5
691,643 + MMP_RS03665 0.74 -0.8
691,643 + MMP_RS03665 0.74 -0.0
691,643 + MMP_RS03665 0.74 +0.3
691,643 + MMP_RS03665 0.74 +0.5
691,643 + MMP_RS03665 0.74 +0.0
691,717 - MMP_RS03665 0.87 -1.8
691,717 - MMP_RS03665 0.87 -0.1
691,718 + MMP_RS03665 0.87 +0.6
691,718 + MMP_RS03665 0.87 -0.4
691,718 + MMP_RS03665 0.87 -0.0
691,758 - +0.3
691,759 + -1.2
691,789 + +0.1
691,801 - +0.2
691,839 - -0.1
691,843 - +0.2
691,843 - -0.1
691,844 + +0.2
691,845 - -0.0
691,871 - +0.3
691,875 - -0.4
691,876 + +0.1
691,898 + +0.0
691,905 + -0.8
691,933 + +0.4
691,956 + -0.4
691,956 + +1.1
691,956 + -0.3
691,956 + +0.1
691,967 + -0.2
692,053 - MMP_RS03670 0.16 -0.2
692,080 + MMP_RS03670 0.22 -2.0
692,141 - MMP_RS03670 0.36 -0.0
692,243 - MMP_RS03670 0.59 -0.1
692,251 + MMP_RS03670 0.61 +0.1
692,256 + MMP_RS03670 0.62 +0.4
692,423 - +0.1
692,442 + +0.0
692,442 + +0.1
692,461 - -0.0
692,462 + -0.4
692,548 - +0.0
692,551 - MMP_RS03675 0.10 -0.1
692,552 + MMP_RS03675 0.10 +0.1
692,552 + MMP_RS03675 0.10 +0.2
692,553 - MMP_RS03675 0.10 +0.1
692,609 + MMP_RS03675 0.17 +0.4
692,617 - MMP_RS03675 0.18 +0.5
692,619 - MMP_RS03675 0.18 +0.7
692,619 - MMP_RS03675 0.18 +0.2
692,620 + MMP_RS03675 0.18 -0.6
692,620 + MMP_RS03675 0.18 -0.1
692,628 - MMP_RS03675 0.19 +0.2
692,692 + MMP_RS03675 0.26 -0.1
692,692 + MMP_RS03675 0.26 +0.1
692,697 + MMP_RS03675 0.27 -0.0
692,697 + MMP_RS03675 0.27 -0.1
692,709 + MMP_RS03675 0.28 +0.2
692,721 - MMP_RS03675 0.29 -0.2
692,721 - MMP_RS03675 0.29 +0.9
692,721 - MMP_RS03675 0.29 +0.3
692,721 - MMP_RS03675 0.29 +0.3
692,830 - MMP_RS03675 0.42 -0.2
692,830 - MMP_RS03675 0.42 -0.2
692,908 + MMP_RS03675 0.51 -0.7
692,983 - MMP_RS03675 0.59 +0.4
693,198 - MMP_RS03675 0.84 +0.3
693,199 + MMP_RS03675 0.84 -0.7
693,240 - MMP_RS03675 0.89 +0.3
693,240 - MMP_RS03675 0.89 -0.2
693,286 + +0.3
693,359 + -0.8
693,359 + -1.0
693,359 + +0.3
693,359 + +0.1
693,361 + -0.5
693,432 - +0.1
693,466 - MMP_RS03680 0.12 -0.2
693,467 + MMP_RS03680 0.12 +0.0
693,467 + MMP_RS03680 0.12 -0.4
693,467 + MMP_RS03680 0.12 +0.4
693,717 - MMP_RS03680 0.36 -1.1
693,815 + MMP_RS03680 0.46 -0.2
694,043 - MMP_RS03680 0.68 -0.0
694,048 + MMP_RS03680 0.69 -0.2
694,067 + MMP_RS03680 0.71 -1.4
694,067 + MMP_RS03680 0.71 -0.6
694,276 + -0.7

Or see this region's nucleotide sequence