Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03560

Experiment: Formate with hypochlorite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03555 and MMP_RS03560 are separated by 102 nucleotidesMMP_RS03560 and MMP_RS03565 are separated by 90 nucleotidesMMP_RS03565 and MMP_RS03570 are separated by 36 nucleotides MMP_RS03555: MMP_RS03555 - transcriptional regulator, at 665,642 to 666,622 _RS03555 MMP_RS03560: MMP_RS03560 - Na+/H+ antiporter NhaC family protein, at 666,725 to 668,302 _RS03560 MMP_RS03565: MMP_RS03565 - uracil phosphoribosyltransferase, at 668,393 to 669,088 _RS03565 MMP_RS03570: MMP_RS03570 - uracil-xanthine permease family protein, at 669,125 to 670,366 _RS03570 Position (kb) 666 667 668 669Strain fitness (log2 ratio) -2 -1 0 1at 665.754 kb on - strand, within MMP_RS03555at 665.785 kb on + strand, within MMP_RS03555at 665.785 kb on + strand, within MMP_RS03555at 665.788 kb on - strand, within MMP_RS03555at 666.107 kb on - strand, within MMP_RS03555at 666.165 kb on - strand, within MMP_RS03555at 666.166 kb on + strand, within MMP_RS03555at 666.166 kb on + strand, within MMP_RS03555at 666.166 kb on + strand, within MMP_RS03555at 666.166 kb on + strand, within MMP_RS03555at 666.397 kb on - strand, within MMP_RS03555at 666.404 kb on + strand, within MMP_RS03555at 666.621 kb on + strandat 666.727 kb on + strandat 666.756 kb on - strandat 666.935 kb on + strand, within MMP_RS03560at 666.935 kb on + strand, within MMP_RS03560at 666.969 kb on - strand, within MMP_RS03560at 666.969 kb on - strand, within MMP_RS03560at 666.969 kb on - strand, within MMP_RS03560at 666.970 kb on + strand, within MMP_RS03560at 666.970 kb on + strand, within MMP_RS03560at 666.970 kb on + strand, within MMP_RS03560at 666.971 kb on - strand, within MMP_RS03560at 666.972 kb on + strand, within MMP_RS03560at 667.084 kb on - strand, within MMP_RS03560at 667.085 kb on + strand, within MMP_RS03560at 667.085 kb on + strand, within MMP_RS03560at 667.112 kb on - strand, within MMP_RS03560at 667.115 kb on - strand, within MMP_RS03560at 667.124 kb on - strand, within MMP_RS03560at 667.176 kb on - strand, within MMP_RS03560at 667.226 kb on - strand, within MMP_RS03560at 667.227 kb on + strand, within MMP_RS03560at 667.228 kb on - strand, within MMP_RS03560at 667.229 kb on + strand, within MMP_RS03560at 667.237 kb on - strand, within MMP_RS03560at 667.315 kb on - strand, within MMP_RS03560at 667.321 kb on + strand, within MMP_RS03560at 667.331 kb on + strand, within MMP_RS03560at 667.337 kb on - strand, within MMP_RS03560at 667.346 kb on - strand, within MMP_RS03560at 667.466 kb on - strand, within MMP_RS03560at 667.631 kb on + strand, within MMP_RS03560at 667.662 kb on - strand, within MMP_RS03560at 667.662 kb on - strand, within MMP_RS03560at 667.663 kb on + strand, within MMP_RS03560at 667.663 kb on + strand, within MMP_RS03560at 667.663 kb on + strand, within MMP_RS03560at 667.666 kb on - strand, within MMP_RS03560at 667.666 kb on - strand, within MMP_RS03560at 667.666 kb on - strand, within MMP_RS03560at 667.666 kb on - strand, within MMP_RS03560at 667.667 kb on + strand, within MMP_RS03560at 667.667 kb on + strand, within MMP_RS03560at 667.671 kb on - strand, within MMP_RS03560at 667.671 kb on - strand, within MMP_RS03560at 667.672 kb on + strand, within MMP_RS03560at 667.672 kb on + strand, within MMP_RS03560at 667.787 kb on - strand, within MMP_RS03560at 667.796 kb on - strand, within MMP_RS03560at 667.823 kb on + strand, within MMP_RS03560at 667.824 kb on - strand, within MMP_RS03560at 667.824 kb on - strand, within MMP_RS03560at 667.824 kb on - strand, within MMP_RS03560at 667.825 kb on + strand, within MMP_RS03560at 668.057 kb on - strand, within MMP_RS03560at 668.061 kb on + strand, within MMP_RS03560at 668.121 kb on + strand, within MMP_RS03560at 668.144 kb on + strand, within MMP_RS03560at 668.147 kb on - strandat 668.152 kb on - strandat 668.173 kb on - strandat 668.193 kb on + strandat 668.193 kb on + strandat 668.229 kb on - strandat 668.285 kb on - strandat 668.286 kb on + strandat 668.289 kb on + strandat 668.302 kb on - strandat 668.302 kb on - strandat 668.307 kb on + strandat 668.307 kb on + strandat 668.308 kb on - strandat 668.309 kb on + strandat 668.329 kb on + strandat 668.354 kb on + strandat 668.354 kb on + strandat 668.356 kb on + strandat 668.386 kb on - strandat 668.386 kb on - strandat 668.386 kb on - strandat 668.386 kb on - strandat 668.386 kb on - strandat 668.480 kb on - strand, within MMP_RS03565at 668.480 kb on - strand, within MMP_RS03565at 668.484 kb on - strand, within MMP_RS03565at 668.494 kb on - strand, within MMP_RS03565at 668.591 kb on - strand, within MMP_RS03565at 668.648 kb on + strand, within MMP_RS03565at 668.719 kb on + strand, within MMP_RS03565at 668.729 kb on - strand, within MMP_RS03565at 668.730 kb on + strand, within MMP_RS03565at 668.734 kb on - strand, within MMP_RS03565at 668.842 kb on - strand, within MMP_RS03565at 668.845 kb on - strand, within MMP_RS03565at 668.860 kb on - strand, within MMP_RS03565at 669.032 kb on - strandat 669.084 kb on + strandat 669.088 kb on - strandat 669.114 kb on + strandat 669.119 kb on + strandat 669.279 kb on + strand, within MMP_RS03570

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM
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665,754 - MMP_RS03555 0.11 -1.0
665,785 + MMP_RS03555 0.15 -2.0
665,785 + MMP_RS03555 0.15 -2.0
665,788 - MMP_RS03555 0.15 -1.3
666,107 - MMP_RS03555 0.47 -1.9
666,165 - MMP_RS03555 0.53 -1.1
666,166 + MMP_RS03555 0.53 -1.5
666,166 + MMP_RS03555 0.53 -0.9
666,166 + MMP_RS03555 0.53 -1.5
666,166 + MMP_RS03555 0.53 -1.5
666,397 - MMP_RS03555 0.77 -0.4
666,404 + MMP_RS03555 0.78 -1.0
666,621 + +0.1
666,727 + +0.4
666,756 - -0.8
666,935 + MMP_RS03560 0.13 -1.1
666,935 + MMP_RS03560 0.13 -0.7
666,969 - MMP_RS03560 0.15 -0.2
666,969 - MMP_RS03560 0.15 -1.9
666,969 - MMP_RS03560 0.15 -0.9
666,970 + MMP_RS03560 0.16 -1.6
666,970 + MMP_RS03560 0.16 -1.2
666,970 + MMP_RS03560 0.16 +0.4
666,971 - MMP_RS03560 0.16 -1.4
666,972 + MMP_RS03560 0.16 -0.8
667,084 - MMP_RS03560 0.23 -1.1
667,085 + MMP_RS03560 0.23 -0.6
667,085 + MMP_RS03560 0.23 -1.4
667,112 - MMP_RS03560 0.25 -0.9
667,115 - MMP_RS03560 0.25 -0.6
667,124 - MMP_RS03560 0.25 -1.2
667,176 - MMP_RS03560 0.29 -0.7
667,226 - MMP_RS03560 0.32 -0.7
667,227 + MMP_RS03560 0.32 -1.7
667,228 - MMP_RS03560 0.32 -0.9
667,229 + MMP_RS03560 0.32 -0.7
667,237 - MMP_RS03560 0.32 -1.2
667,315 - MMP_RS03560 0.37 -0.4
667,321 + MMP_RS03560 0.38 -1.2
667,331 + MMP_RS03560 0.38 -0.1
667,337 - MMP_RS03560 0.39 -0.8
667,346 - MMP_RS03560 0.39 -1.1
667,466 - MMP_RS03560 0.47 -1.1
667,631 + MMP_RS03560 0.57 -0.6
667,662 - MMP_RS03560 0.59 -0.4
667,662 - MMP_RS03560 0.59 -1.3
667,663 + MMP_RS03560 0.59 -1.1
667,663 + MMP_RS03560 0.59 -1.5
667,663 + MMP_RS03560 0.59 -0.6
667,666 - MMP_RS03560 0.60 -1.7
667,666 - MMP_RS03560 0.60 -1.1
667,666 - MMP_RS03560 0.60 -0.8
667,666 - MMP_RS03560 0.60 -1.9
667,667 + MMP_RS03560 0.60 -0.5
667,667 + MMP_RS03560 0.60 -0.9
667,671 - MMP_RS03560 0.60 -0.5
667,671 - MMP_RS03560 0.60 -0.5
667,672 + MMP_RS03560 0.60 -0.5
667,672 + MMP_RS03560 0.60 -0.8
667,787 - MMP_RS03560 0.67 -0.5
667,796 - MMP_RS03560 0.68 -0.8
667,823 + MMP_RS03560 0.70 -0.5
667,824 - MMP_RS03560 0.70 -0.6
667,824 - MMP_RS03560 0.70 -1.3
667,824 - MMP_RS03560 0.70 -0.0
667,825 + MMP_RS03560 0.70 -1.0
668,057 - MMP_RS03560 0.84 -2.5
668,061 + MMP_RS03560 0.85 +0.0
668,121 + MMP_RS03560 0.88 -1.5
668,144 + MMP_RS03560 0.90 -1.2
668,147 - -1.1
668,152 - -0.6
668,173 - -0.3
668,193 + -0.6
668,193 + -0.7
668,229 - -0.8
668,285 - -0.0
668,286 + -0.8
668,289 + -1.2
668,302 - -1.7
668,302 - -1.7
668,307 + -1.3
668,307 + -0.5
668,308 - -0.7
668,309 + -0.9
668,329 + -1.6
668,354 + -0.5
668,354 + -1.5
668,356 + -0.9
668,386 - -1.6
668,386 - -0.3
668,386 - -0.4
668,386 - -0.7
668,386 - -0.4
668,480 - MMP_RS03565 0.12 +0.0
668,480 - MMP_RS03565 0.12 +0.3
668,484 - MMP_RS03565 0.13 +0.1
668,494 - MMP_RS03565 0.15 -0.6
668,591 - MMP_RS03565 0.28 +0.4
668,648 + MMP_RS03565 0.37 -0.8
668,719 + MMP_RS03565 0.47 -0.0
668,729 - MMP_RS03565 0.48 +0.3
668,730 + MMP_RS03565 0.48 -0.8
668,734 - MMP_RS03565 0.49 +0.1
668,842 - MMP_RS03565 0.65 +0.2
668,845 - MMP_RS03565 0.65 -0.6
668,860 - MMP_RS03565 0.67 +0.2
669,032 - -0.4
669,084 + -0.5
669,088 - +0.4
669,114 + -0.4
669,119 + -0.1
669,279 + MMP_RS03570 0.12 -0.1

Or see this region's nucleotide sequence