Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03135 and MMP_RS03140 are separated by 193 nucleotides MMP_RS03140 and MMP_RS03145 are separated by 17 nucleotides MMP_RS03145 and MMP_RS03150 are separated by 156 nucleotides
MMP_RS03135: MMP_RS03135 - O-phosphoseryl-tRNA(Sec) selenium transferase, at 590,364 to 591,674
_RS03135
MMP_RS03140: MMP_RS03140 - hypothetical protein, at 591,868 to 593,298
_RS03140
MMP_RS03145: MMP_RS03145 - fibrillarin-like rRNA/tRNA 2'-O-methyltransferase, at 593,316 to 594,008
_RS03145
MMP_RS03150: MMP_RS03150 - phosphoglycerate mutase, at 594,165 to 595,451
_RS03150
Position (kb) 591
592
593
594 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 590.905 kb on - strand at 590.983 kb on + strand at 591.114 kb on - strand at 591.321 kb on - strand at 591.340 kb on - strand at 591.341 kb on + strand at 591.341 kb on + strand at 591.347 kb on - strand at 591.446 kb on + strand at 591.531 kb on - strand at 591.715 kb on - strand at 591.750 kb on - strand at 591.779 kb on - strand at 591.782 kb on - strand at 591.783 kb on + strand at 591.802 kb on - strand at 591.824 kb on - strand at 591.831 kb on + strand at 591.956 kb on + strand at 591.997 kb on - strand at 591.998 kb on + strand at 592.086 kb on - strand, within MMP_RS03140 at 592.249 kb on + strand, within MMP_RS03140 at 592.256 kb on - strand, within MMP_RS03140 at 592.256 kb on - strand, within MMP_RS03140 at 592.338 kb on + strand, within MMP_RS03140 at 592.339 kb on - strand, within MMP_RS03140 at 592.340 kb on + strand, within MMP_RS03140 at 592.377 kb on - strand, within MMP_RS03140 at 592.381 kb on - strand, within MMP_RS03140 at 592.382 kb on + strand, within MMP_RS03140 at 592.420 kb on - strand, within MMP_RS03140 at 592.423 kb on + strand, within MMP_RS03140 at 592.554 kb on + strand, within MMP_RS03140 at 592.564 kb on - strand, within MMP_RS03140 at 592.565 kb on + strand, within MMP_RS03140 at 592.571 kb on + strand, within MMP_RS03140 at 592.667 kb on - strand, within MMP_RS03140 at 592.757 kb on - strand, within MMP_RS03140 at 593.313 kb on - strand at 593.313 kb on - strand at 593.354 kb on + strand at 593.354 kb on + strand at 593.354 kb on + strand at 593.455 kb on - strand, within MMP_RS03145 at 593.455 kb on - strand, within MMP_RS03145 at 593.462 kb on - strand, within MMP_RS03145 at 593.504 kb on - strand, within MMP_RS03145 at 593.507 kb on + strand, within MMP_RS03145 at 593.554 kb on + strand, within MMP_RS03145 at 593.597 kb on - strand, within MMP_RS03145 at 594.006 kb on - strand at 594.007 kb on + strand at 594.016 kb on - strand at 594.016 kb on - strand at 594.017 kb on + strand at 594.023 kb on - strand at 594.059 kb on - strand at 594.068 kb on - strand at 594.069 kb on + strand at 594.069 kb on + strand at 594.071 kb on + strand at 594.091 kb on + strand at 594.103 kb on + strand at 594.121 kb on + strand at 594.135 kb on - strand at 594.144 kb on - strand at 594.148 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 590,905 - -3.2 590,983 + -2.9 591,114 - -2.6 591,321 - -3.2 591,340 - -2.8 591,341 + -1.1 591,341 + -2.1 591,347 - -2.8 591,446 + -2.3 591,531 - -1.3 591,715 - -0.3 591,750 - -0.3 591,779 - -0.0 591,782 - +0.6 591,783 + -0.5 591,802 - -0.3 591,824 - -0.3 591,831 + -0.0 591,956 + -1.6 591,997 - -0.4 591,998 + -0.9 592,086 - MMP_RS03140 0.15 -1.5 592,249 + MMP_RS03140 0.27 -0.6 592,256 - MMP_RS03140 0.27 -1.7 592,256 - MMP_RS03140 0.27 -1.1 592,338 + MMP_RS03140 0.33 -0.9 592,339 - MMP_RS03140 0.33 -0.8 592,340 + MMP_RS03140 0.33 -0.8 592,377 - MMP_RS03140 0.36 -0.7 592,381 - MMP_RS03140 0.36 -0.6 592,382 + MMP_RS03140 0.36 -1.6 592,420 - MMP_RS03140 0.39 -0.4 592,423 + MMP_RS03140 0.39 -1.2 592,554 + MMP_RS03140 0.48 -1.2 592,564 - MMP_RS03140 0.49 -0.6 592,565 + MMP_RS03140 0.49 -1.0 592,571 + MMP_RS03140 0.49 -0.8 592,667 - MMP_RS03140 0.56 -0.5 592,757 - MMP_RS03140 0.62 -0.9 593,313 - -0.7 593,313 - -1.2 593,354 + -1.1 593,354 + -1.7 593,354 + -1.1 593,455 - MMP_RS03145 0.20 -0.7 593,455 - MMP_RS03145 0.20 -0.8 593,462 - MMP_RS03145 0.21 -0.9 593,504 - MMP_RS03145 0.27 -0.8 593,507 + MMP_RS03145 0.28 -1.1 593,554 + MMP_RS03145 0.34 -1.4 593,597 - MMP_RS03145 0.41 -1.5 594,006 - +0.3 594,007 + -0.1 594,016 - +0.7 594,016 - +0.2 594,017 + -0.4 594,023 - -0.4 594,059 - +0.3 594,068 - -0.2 594,069 + +0.7 594,069 + +0.3 594,071 + -0.2 594,091 + +0.0 594,103 + -0.1 594,121 + +0.6 594,135 - +0.3 594,144 - -0.3 594,148 + +0.4
Or see this region's nucleotide sequence