Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02775 and MMP_RS02780 are separated by 515 nucleotides MMP_RS02780 and MMP_RS02785 are separated by 13 nucleotides MMP_RS02785 and MMP_RS02790 are separated by 1 nucleotides
MMP_RS02775: MMP_RS02775 - hypothetical protein, at 530,661 to 531,122
_RS02775
MMP_RS02780: MMP_RS02780 - hypothetical protein, at 531,638 to 532,351
_RS02780
MMP_RS02785: MMP_RS02785 - MarR family transcriptional regulator, at 532,365 to 532,985
_RS02785
MMP_RS02790: MMP_RS02790 - class III signal peptide-containing protein, at 532,987 to 533,208
_RS02790
Position (kb) 531
532
533 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 530.662 kb on - strand at 530.786 kb on + strand, within MMP_RS02775 at 530.807 kb on - strand, within MMP_RS02775 at 530.808 kb on + strand, within MMP_RS02775 at 530.852 kb on - strand, within MMP_RS02775 at 530.853 kb on + strand, within MMP_RS02775 at 530.861 kb on - strand, within MMP_RS02775 at 530.873 kb on - strand, within MMP_RS02775 at 530.876 kb on - strand, within MMP_RS02775 at 530.877 kb on + strand, within MMP_RS02775 at 530.880 kb on + strand, within MMP_RS02775 at 530.895 kb on + strand, within MMP_RS02775 at 530.898 kb on - strand, within MMP_RS02775 at 531.000 kb on - strand, within MMP_RS02775 at 531.001 kb on + strand, within MMP_RS02775 at 531.003 kb on - strand, within MMP_RS02775 at 531.003 kb on - strand, within MMP_RS02775 at 531.004 kb on + strand, within MMP_RS02775 at 531.008 kb on - strand, within MMP_RS02775 at 531.008 kb on - strand, within MMP_RS02775 at 531.011 kb on - strand, within MMP_RS02775 at 531.015 kb on - strand, within MMP_RS02775 at 531.135 kb on - strand at 531.165 kb on + strand at 531.222 kb on - strand at 531.242 kb on - strand at 531.254 kb on - strand at 531.270 kb on - strand at 531.271 kb on + strand at 531.271 kb on + strand at 531.280 kb on - strand at 531.286 kb on + strand at 531.301 kb on - strand at 531.348 kb on - strand at 531.445 kb on - strand at 531.463 kb on + strand at 531.465 kb on + strand at 531.525 kb on + strand at 531.525 kb on + strand at 531.525 kb on + strand at 531.526 kb on - strand at 531.527 kb on + strand at 531.529 kb on + strand at 531.529 kb on + strand at 531.531 kb on - strand at 531.531 kb on - strand at 531.531 kb on - strand at 531.532 kb on + strand at 531.584 kb on - strand at 531.591 kb on + strand at 531.604 kb on - strand at 531.605 kb on + strand at 531.605 kb on + strand at 531.605 kb on + strand at 531.605 kb on + strand at 531.613 kb on - strand at 531.623 kb on + strand at 531.733 kb on - strand, within MMP_RS02780 at 531.736 kb on + strand, within MMP_RS02780 at 531.912 kb on - strand, within MMP_RS02780 at 531.978 kb on - strand, within MMP_RS02780 at 531.979 kb on + strand, within MMP_RS02780 at 531.979 kb on + strand, within MMP_RS02780 at 531.981 kb on - strand, within MMP_RS02780 at 531.981 kb on - strand, within MMP_RS02780 at 531.982 kb on + strand, within MMP_RS02780 at 531.982 kb on + strand, within MMP_RS02780 at 531.983 kb on - strand, within MMP_RS02780 at 531.983 kb on - strand, within MMP_RS02780 at 531.983 kb on - strand, within MMP_RS02780 at 531.983 kb on - strand, within MMP_RS02780 at 531.984 kb on + strand, within MMP_RS02780 at 531.984 kb on + strand, within MMP_RS02780 at 531.987 kb on - strand, within MMP_RS02780 at 531.988 kb on + strand, within MMP_RS02780 at 531.993 kb on - strand, within MMP_RS02780 at 532.009 kb on - strand, within MMP_RS02780 at 532.049 kb on + strand, within MMP_RS02780 at 532.086 kb on + strand, within MMP_RS02780 at 532.174 kb on - strand, within MMP_RS02780 at 532.190 kb on - strand, within MMP_RS02780 at 532.191 kb on + strand, within MMP_RS02780 at 532.195 kb on - strand, within MMP_RS02780 at 532.195 kb on - strand, within MMP_RS02780 at 532.196 kb on + strand, within MMP_RS02780 at 532.197 kb on - strand, within MMP_RS02780 at 532.197 kb on - strand, within MMP_RS02780 at 532.197 kb on - strand, within MMP_RS02780 at 532.198 kb on + strand, within MMP_RS02780 at 532.198 kb on + strand, within MMP_RS02780 at 532.198 kb on + strand, within MMP_RS02780 at 532.201 kb on - strand, within MMP_RS02780 at 532.201 kb on - strand, within MMP_RS02780 at 532.250 kb on - strand, within MMP_RS02780 at 532.250 kb on - strand, within MMP_RS02780 at 532.251 kb on + strand, within MMP_RS02780 at 532.251 kb on + strand, within MMP_RS02780 at 532.286 kb on + strand at 532.286 kb on + strand at 532.289 kb on - strand at 532.345 kb on + strand at 532.349 kb on - strand at 532.384 kb on - strand at 532.392 kb on - strand at 532.392 kb on - strand at 532.392 kb on - strand at 532.392 kb on - strand at 532.393 kb on + strand at 532.393 kb on + strand at 532.394 kb on - strand at 532.403 kb on + strand at 532.420 kb on - strand at 532.486 kb on + strand, within MMP_RS02785 at 532.508 kb on + strand, within MMP_RS02785 at 532.510 kb on + strand, within MMP_RS02785 at 532.519 kb on + strand, within MMP_RS02785 at 532.541 kb on + strand, within MMP_RS02785 at 532.556 kb on + strand, within MMP_RS02785 at 532.573 kb on - strand, within MMP_RS02785 at 532.616 kb on - strand, within MMP_RS02785 at 532.828 kb on - strand, within MMP_RS02785 at 532.906 kb on - strand, within MMP_RS02785 at 532.922 kb on - strand, within MMP_RS02785 at 532.942 kb on + strand at 532.954 kb on - strand at 532.982 kb on + strand at 532.983 kb on - strand at 533.038 kb on - strand, within MMP_RS02790 at 533.225 kb on - strand at 533.248 kb on - strand at 533.249 kb on + strand at 533.253 kb on + strand at 533.253 kb on + strand at 533.253 kb on + strand at 533.272 kb on - strand at 533.273 kb on + strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.276 kb on - strand at 533.276 kb on - strand at 533.276 kb on - strand at 533.276 kb on - strand at 533.276 kb on - strand at 533.276 kb on - strand at 533.277 kb on + strand at 533.277 kb on + strand at 533.303 kb on - strand at 533.303 kb on - strand at 533.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 530,662 - +0.5 530,786 + MMP_RS02775 0.27 +0.4 530,807 - MMP_RS02775 0.32 +0.1 530,808 + MMP_RS02775 0.32 -0.1 530,852 - MMP_RS02775 0.41 +0.2 530,853 + MMP_RS02775 0.42 +0.4 530,861 - MMP_RS02775 0.43 -0.6 530,873 - MMP_RS02775 0.46 +0.0 530,876 - MMP_RS02775 0.47 +0.3 530,877 + MMP_RS02775 0.47 +0.2 530,880 + MMP_RS02775 0.47 -0.2 530,895 + MMP_RS02775 0.51 +0.1 530,898 - MMP_RS02775 0.51 +0.7 531,000 - MMP_RS02775 0.73 +0.7 531,001 + MMP_RS02775 0.74 +0.4 531,003 - MMP_RS02775 0.74 +0.6 531,003 - MMP_RS02775 0.74 +0.1 531,004 + MMP_RS02775 0.74 +0.3 531,008 - MMP_RS02775 0.75 +0.4 531,008 - MMP_RS02775 0.75 +0.1 531,011 - MMP_RS02775 0.76 +0.3 531,015 - MMP_RS02775 0.77 -0.0 531,135 - +0.1 531,165 + -0.4 531,222 - +0.4 531,242 - -0.3 531,254 - +0.3 531,270 - +1.1 531,271 + +0.3 531,271 + -0.3 531,280 - -0.5 531,286 + +1.4 531,301 - -0.1 531,348 - -0.6 531,445 - +0.0 531,463 + +0.4 531,465 + +0.1 531,525 + -1.6 531,525 + +0.4 531,525 + -0.2 531,526 - +0.3 531,527 + +0.4 531,529 + -0.3 531,529 + -0.1 531,531 - +0.2 531,531 - -0.7 531,531 - +0.4 531,532 + +0.3 531,584 - -1.9 531,591 + -2.3 531,604 - -2.8 531,605 + -2.9 531,605 + -1.7 531,605 + -2.8 531,605 + -2.6 531,613 - -2.9 531,623 + -1.9 531,733 - MMP_RS02780 0.13 -2.5 531,736 + MMP_RS02780 0.14 -3.6 531,912 - MMP_RS02780 0.38 -3.7 531,978 - MMP_RS02780 0.48 -4.0 531,979 + MMP_RS02780 0.48 -3.0 531,979 + MMP_RS02780 0.48 -2.9 531,981 - MMP_RS02780 0.48 -2.4 531,981 - MMP_RS02780 0.48 -3.9 531,982 + MMP_RS02780 0.48 -3.6 531,982 + MMP_RS02780 0.48 -3.5 531,983 - MMP_RS02780 0.48 -4.0 531,983 - MMP_RS02780 0.48 -3.9 531,983 - MMP_RS02780 0.48 -2.7 531,983 - MMP_RS02780 0.48 -1.8 531,984 + MMP_RS02780 0.48 -3.2 531,984 + MMP_RS02780 0.48 -3.5 531,987 - MMP_RS02780 0.49 -4.5 531,988 + MMP_RS02780 0.49 -3.4 531,993 - MMP_RS02780 0.50 -3.5 532,009 - MMP_RS02780 0.52 -2.3 532,049 + MMP_RS02780 0.58 -3.3 532,086 + MMP_RS02780 0.63 -1.4 532,174 - MMP_RS02780 0.75 -2.1 532,190 - MMP_RS02780 0.77 -0.8 532,191 + MMP_RS02780 0.77 +0.0 532,195 - MMP_RS02780 0.78 -0.4 532,195 - MMP_RS02780 0.78 -2.6 532,196 + MMP_RS02780 0.78 +0.1 532,197 - MMP_RS02780 0.78 -0.2 532,197 - MMP_RS02780 0.78 -0.2 532,197 - MMP_RS02780 0.78 -0.1 532,198 + MMP_RS02780 0.78 +0.6 532,198 + MMP_RS02780 0.78 +0.5 532,198 + MMP_RS02780 0.78 +0.8 532,201 - MMP_RS02780 0.79 +0.6 532,201 - MMP_RS02780 0.79 -0.0 532,250 - MMP_RS02780 0.86 -1.2 532,250 - MMP_RS02780 0.86 +0.5 532,251 + MMP_RS02780 0.86 +0.4 532,251 + MMP_RS02780 0.86 +0.1 532,286 + -0.1 532,286 + +0.2 532,289 - -0.4 532,345 + +0.2 532,349 - -0.3 532,384 - -0.1 532,392 - -0.2 532,392 - +0.6 532,392 - +0.6 532,392 - +0.1 532,393 + -0.4 532,393 + +0.3 532,394 - -0.1 532,403 + +0.4 532,420 - -0.5 532,486 + MMP_RS02785 0.19 -0.2 532,508 + MMP_RS02785 0.23 -0.8 532,510 + MMP_RS02785 0.23 +0.2 532,519 + MMP_RS02785 0.25 +0.6 532,541 + MMP_RS02785 0.28 +0.1 532,556 + MMP_RS02785 0.31 -0.6 532,573 - MMP_RS02785 0.33 +0.3 532,616 - MMP_RS02785 0.40 -0.1 532,828 - MMP_RS02785 0.75 +0.5 532,906 - MMP_RS02785 0.87 -0.2 532,922 - MMP_RS02785 0.90 +0.9 532,942 + -0.6 532,954 - +0.1 532,982 + +0.1 532,983 - -0.5 533,038 - MMP_RS02790 0.23 -0.1 533,225 - +0.1 533,248 - +0.3 533,249 + +0.9 533,253 + -0.3 533,253 + +0.5 533,253 + +0.4 533,272 - +0.1 533,273 + +0.1 533,274 - -0.1 533,274 - +0.7 533,274 - +0.2 533,274 - -0.0 533,274 - -1.1 533,274 - -0.1 533,275 + -0.0 533,275 + -0.6 533,275 + +0.6 533,275 + -0.0 533,275 + +0.1 533,275 + +0.0 533,275 + +0.0 533,276 - -0.0 533,276 - +0.0 533,276 - +0.3 533,276 - -0.5 533,276 - -0.0 533,276 - +1.1 533,277 + -0.1 533,277 + +0.0 533,303 - -0.3 533,303 - -0.4 533,324 - -0.1
Or see this region's nucleotide sequence